ENSGALG00000009037


Gallus gallus

Features
Gene ID: ENSGALG00000009037
  
Biological name :SPTLC3
  
Synonyms : serine palmitoyltransferase long chain base subunit 3 / SPTLC3
  
Possible biological names infered from orthology : Mus musculus serine palmitoyltransferase, long chain base subunit 3 (Sptlc3), transcript variant 1, mRNA. / Q8BG54 / Q9NUV7
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 12782787
Gene end: 12862752
  
Corresponding Affymetrix probe sets: Gga.18576.1.S1_at (Chicken Array)   GgaAffx.5707.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014693
NCBI entrez gene - 768538     See in Manteia.
RefSeq - XM_001231525
swissprot - F1NHR1
Ensembl - ENSGALG00000009037
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sptlc3ENSDARG00000030743Danio rerio
 Q9NUV7ENSG00000172296Homo sapiens
 Q8BG54ENSMUSG00000039092Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SPTLC2 / serine palmitoyltransferase long chain base subunit 2 / O15270* / P97363*ENSGALG0000003192871


Protein motifs (from Interpro)
Interpro ID Name
 IPR001917  Aminotransferase, class-II, pyridoxal-phosphate binding site
 IPR004839  Aminotransferase, class I/classII
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0009058 biosynthetic process IEA
 biological_processGO:0046520 sphingoid biosynthetic process IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0017059 serine C-palmitoyltransferase complex IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004758 serine C-palmitoyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IEA


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000013493 SPTLC1 / serine palmitoyltransferase long chain base subunit 1 / O15269* / O35704* / Serine palmitoyltransferase 1 *  / complex
 ENSGALG00000025755 SPTSSA / serine palmitoyltransferase small subunit A / Gm6993* / Q8R207* / Q969W0*  / complex
 ENSGALG00000026131 Q8NFR3* / Q925E8* / SPTSSB* / serine palmitoyltransferase small subunit B*  / complex
 ENSGALG00000027494 SPTSSB / Q8NFR3* / Q925E8* / serine palmitoyltransferase small subunit B*  / complex






 

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