ENSGALG00000028018


Gallus gallus

Features
Gene ID: ENSGALG00000028018
  
Biological name :RAB38
  
Synonyms : RAB38 / RAB38, member RAS oncogene family
  
Possible biological names infered from orthology : P57729 / Q8QZZ8
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 188343867
Gene end: 188364092
  
Corresponding Affymetrix probe sets: GgaAffx.11060.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043111
NCBI entrez gene - 428095     See in Manteia.
RefSeq - XM_015280353
swissprot - R4GLM3
Ensembl - ENSGALG00000028018
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab38bENSDARG00000112889Danio rerio
 RAB38ENSG00000123892Homo sapiens
 Rab38ENSMUSG00000030559Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAB32 / RAB32, member RAS oncogene family / Q13637* / Q9CZE3*ENSGALG0000001230065
RAB29 / RAB29, member RAS oncogene family / O14966*ENSGALG0000000071248
RAB7B / RAB7B, member RAS oncogene family / Q8VEA8* / Q96AH8*ENSGALG0000000076933
RAB9A / RAB9A, member RAS oncogene family / Rab9* / Q9R0M6* / P51151* / RAB9, member RAS oncogene family*ENSGALG0000001657931
RAB7A / RAB7A, member RAS oncogene family / Rab7* / P51150* / P51149* / RAB7, member RAS oncogene family*ENSGALG0000000590231
RAB9B / RAB9B, member RAS oncogene family / Q8BHH2* / Q9NP90*ENSGALG0000000491829
RAB23 / ras-related protein Rab-23 / Q9ULC3* / RAB23, member RAS oncogene family*ENSGALG0000001627929


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007005 mitochondrion organization IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0035646 endosome to melanosome transport IEA
 biological_processGO:0072657 protein localization to membrane IEA
 biological_processGO:0090383 phagosome acidification IEA
 biological_processGO:1903232 melanosome assembly IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031982 vesicle IEA
 cellular_componentGO:0033162 melanosome membrane IEA
 cellular_componentGO:0042470 melanosome IEA
 cellular_componentGO:0044233 ER-mitochondrion membrane contact site IEA
 cellular_componentGO:0045335 phagocytic vesicle IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0030742 GTP-dependent protein binding IEA
 molecular_functionGO:0035650 AP-1 adaptor complex binding IEA
 molecular_functionGO:0035651 AP-3 adaptor complex binding IEA
 molecular_functionGO:0036461 BLOC-2 complex binding IEA


Pathways (from Reactome)
Pathway description
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000005595 HPS4 / HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 / Q99KG7* / Q9NQG7* / Hermansky-Pudlak syndrome 4 protein homolog *  / reaction
 ENSGALG00000017419 HPS1 / HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 / Q92902* / Mus musculus HPS1, biosis of lysosomal organelles complex 3 subunit 1 (Hps1), transcript variant 2, mRNA.*  / reaction






 

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