ENSGALG00000029022


Gallus gallus

Features
Gene ID: ENSGALG00000029022
  
Biological name :NPAS3
  
Synonyms : neuronal PAS domain protein 3 / NPAS3
  
Possible biological names infered from orthology : Q8IXF0
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 35109226
Gene end: 35715442
  
Corresponding Affymetrix probe sets: Gga.14493.1.S1_s_at (Chicken Array)   GgaAffx.21069.1.S1_at (Chicken Array)   GgaAffx.23091.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043219
Ensembl peptide - ENSGALP00000059132
Ensembl peptide - ENSGALP00000058701
NCBI entrez gene - 423315     See in Manteia.
RefSeq - XM_015287645
RefSeq - XM_015287646
RefSeq - XM_015287647
RefSeq - XM_015287648
swissprot - A0A1L1RIX7
swissprot - R4GLX5
swissprot - A0A1L1RK50
Ensembl - ENSGALG00000029022
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NPAS3ENSDARG00000109820Danio rerio
 NPAS3ENSG00000151322Homo sapiens
 Npas3ENSMUSG00000021010Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SIM1 / single-minded family bHLH transcription factor 1 / P81133* / Q61045* / Single-minded homolog 1 *ENSGALG0000001546624
SIM2 / single-minded family bHLH transcription factor 2 / Q14190* / Q61079* / Single-minded homolog 2 *ENSGALG0000001604423
HIF1A / hypoxia-inducible factor 1-alpha / Q16665* / Q61221* / hypoxia inducible factor 1 alpha subunit*ENSGALG0000001187021
EPAS1 / endothelial PAS domain protein 1 / P97481* / Q99814* / Endothelial PAS domain-containing protein 1 *ENSGALG0000001000520
ARNT2 / aryl hydrocarbon receptor nuclear translocator 2 / Q61324* / Q9HBZ2*ENSGALG0000000644513
ARNT / aryl hydrocarbon receptor nuclear translocator / P27540* / P53762*ENSGALG0000000075113
ARNTL / Q9I8T7 / Aryl hydrocarbon receptor nuclear translocator-like protein 1 / Q9WTL8* / O00327* / aryl hydrocarbon receptor nuclear translocator like* / Mus musculus aryl hydrocarbon re...ENSGALG0000000537812
CLOCK / circadian locomoter output cycles protein kaput isoform 1 / O08785* / O15516* / clock circadian regulator* / Circadian locomoter output cycles protein kaput *ENSGALG0000001379311
NPAS2 / neuronal PAS domain-containing protein 2 / Q99743* / neuronal PAS domain protein 2*ENSGALG0000001677411
ARNTL2 / aryl hydrocarbon receptor nuclear translocator-like protein 2 / Q2VPD4* / Q8WYA1* / aryl hydrocarbon receptor nuclear translocator like 2*ENSGALG0000001409611
ENSGALG0000000906310


Protein motifs (from Interpro)
Interpro ID Name
 IPR000014  PAS domain
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR013655  PAS fold-3
 IPR013767  PAS fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0032502 developmental process IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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