ENSGALG00000041327


Gallus gallus

Features
Gene ID: ENSGALG00000041327
  
Biological name :TRIM55
  
Synonyms : TRIM55 / tripartite motif-containing protein 55
  
Possible biological names infered from orthology : Q9BYV6 / tripartite motif containing 55
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 115378323
Gene end: 115415005
  
Corresponding Affymetrix probe sets: Gga.9674.1.S1_at (Chicken Array)   Gga.9674.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045186
NCBI entrez gene - 420166     See in Manteia.
RefSeq - XM_015282741
RefSeq - NM_001199404
RefSeq - XM_015282739
RefSeq - XM_015282740
RefSeq - XM_015282738
RefSeq Peptide - NP_001186333
swissprot - A0A1D5NXT6
Ensembl - ENSGALG00000041327
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim55aENSDARG00000029596Danio rerio
 trim55bENSDARG00000058158Danio rerio
 Q9BYV6ENSG00000147573Homo sapiens
 Trim55ENSMUSG00000060913Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM54 / tripartite motif containing 54 / Q9BYV2* / Q9ERP3* / Tripartite motif-containing protein 54 *ENSGALG0000003320349
TRIM63 / tripartite motif containing 63 / Q969Q1*ENSGALG0000003410746
TRIM36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSGALG0000000818826
MID2 / midline 2 / Q9UJV3* / Mus musculus midline 2 (Mid2), transcript variant 2, mRNA.*ENSGALG0000000386025
MID1 / E3 ubiquitin-protein ligase Midline-1 / O15344* / O70583* / midline 1*ENSGALG0000003850424
TRIM9 / tripartite motif containing 9 / Q8C7M3* / Q9C026* / E3 ubiquitin-protein ligase TRIM9 *ENSGALG0000001236721
TRIM67 / tripartite motif containing 67 / Q505D9* / Q6ZTA4* / Tripartite motif-containing protein 67 *ENSGALG0000003096011
FSD1L / fibronectin type III and SPRY domain containing 1 like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSGALG0000001544211
FSD1* / Q7TPM6* / Q9BTV5* / fibronectin type III and SPRY domain containing 1* / Fibronectin type III and SPRY domain-containing protein 1 *ENSGALG000000329381


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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