ENSGALG00000012367


Gallus gallus

Features
Gene ID: ENSGALG00000012367
  
Biological name :TRIM9
  
Synonyms : TRIM9 / tripartite motif containing 9
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase TRIM9 / Q8C7M3 / Q9C026
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 58110007
Gene end: 58139997
  
Corresponding Affymetrix probe sets: GgaAffx.7826.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058269
Ensembl peptide - ENSGALP00000020171
NCBI entrez gene - 423579     See in Manteia.
RefSeq - XM_015276764
RefSeq - XM_015276762
RefSeq - XM_015276763
RefSeq - XM_015276751
RefSeq - XM_015276752
RefSeq - XM_015276753
RefSeq - XM_015276754
RefSeq - XM_015276755
RefSeq - XM_015276756
RefSeq - XM_015276757
RefSeq - XM_015276758
RefSeq - XM_015276759
RefSeq - XM_015276760
swissprot - F1NA54
swissprot - A0A1D5PZ60
Ensembl - ENSGALG00000012367
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim9ENSDARG00000039123Danio rerio
 TRIM9ENSG00000100505Homo sapiens
 Trim9ENSMUSG00000021071Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM67 / tripartite motif containing 67 / Q505D9* / Q6ZTA4* / Tripartite motif-containing protein 67 *ENSGALG0000003096050
MID2 / midline 2 / Q9UJV3* / Mus musculus midline 2 (Mid2), transcript variant 2, mRNA.*ENSGALG0000000386025
MID1 / E3 ubiquitin-protein ligase Midline-1 / O15344* / O70583* / midline 1*ENSGALG0000003850425
TRIM36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSGALG0000000818823
FSD1L / fibronectin type III and SPRY domain containing 1 like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSGALG0000001544215
TRIM55 / tripartite motif-containing protein 55 / Q9BYV6* / tripartite motif containing 55*ENSGALG0000004132713
TRIM63 / tripartite motif containing 63 / Q969Q1*ENSGALG0000003410713
TRIM54 / tripartite motif containing 54 / Q9BYV2* / Q9ERP3* / Tripartite motif-containing protein 54 *ENSGALG0000003320312
FSD1* / Q7TPM6* / Q9BTV5* / fibronectin type III and SPRY domain containing 1* / Fibronectin type III and SPRY domain-containing protein 1 *ENSGALG000000329384


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003649  B-box, C-terminal
 IPR003877  SPRY domain
 IPR003961  Fibronectin type III
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035544 negative regulation of SNARE complex assembly IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030425 dendrite IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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