ENSDARG00000039123


Danio rerio

Features
Gene ID: ENSDARG00000039123
  
Biological name :trim9
  
Synonyms : trim9 / tripartite motif containing 9
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase TRIM9 / Q8C7M3 / Q9C026
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 36868365
Gene end: 36911118
  
Corresponding Affymetrix probe sets: Dr.12050.1.A1_at (Zebrafish Array)   NM_205563_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000048738
NCBI entrez gene - 336099     See in Manteia.
RefSeq - NM_205563
RefSeq Peptide - NP_991126
swissprot - F1QLY9
ZFIN ID - ZDB-GENE-030131-8043
Ensembl - ENSDARG00000039123
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM9ENSGALG00000012367Gallus gallus
 TRIM9ENSG00000100505Homo sapiens
 Trim9ENSMUSG00000021071Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM67 / tripartite motif containing 67 / Q6ZTA4*ENSDARG0000010878764
mid2 / midline 2 / Q9UJV3*ENSDARG0000003487126
mid1 / midline 1 / O15344* / O70583* / E3 ubiquitin-protein ligase Midline-1 *ENSDARG0000006048225
trim36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSDARG0000006279425
trim46a / tripartite motif containing 46a / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000001236722
trim46b / tripartite motif containing 46b / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000005864922
fsd1l / fibronectin type III and SPRY domain containing 1-like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSDARG0000005943215
fsd1 / Q1LY10 / fibronectin type III and SPRY domain containing 1 / Q9BTV5*ENSDARG0000006201714
trim63b / tripartite motif containing 63b / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000008668513
trim55a / tripartite motif containing 55a / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000002959613
trim101 / tripartite motif containing 101ENSDARG0000001826412
trim54 / tripartite motif containing 54 / Q9BYV2* / Q9ERP3* / Tripartite motif-containing protein 54 *ENSDARG0000002990712
trim55b / tripartite motif containing 55b / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000005815812
trim63a / tripartite motif containing 63a / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000002802712


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003649  B-box, C-terminal
 IPR003877  SPRY domain
 IPR003961  Fibronectin type III
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR035029  E3 ubiquitin-protein ligase TRIM9


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035544 negative regulation of SNARE complex assembly IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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