ENSDARG00000058649


Danio rerio

Features
Gene ID: ENSDARG00000058649
  
Biological name :trim46b
  
Synonyms : trim46b / tripartite motif containing 46b
  
Possible biological names infered from orthology : Q7TNM2 / Q7Z4K8 / TRIM46 / tripartite motif containing 46
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 8582685
Gene end: 8604429
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000075987
Ensembl peptide - ENSDARP00000125681
NCBI entrez gene - 100034631     See in Manteia.
RefSeq - NM_001083100
RefSeq Peptide - NP_001076569
swissprot - F6P3Q3
swissprot - Q1L8B2
ZFIN ID - ZDB-GENE-060503-466
Ensembl - ENSDARG00000058649
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q7Z4K8ENSG00000163462Homo sapiens
 Q7TNM2ENSMUSG00000042766Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim46a / tripartite motif containing 46a / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000001236772
trim36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSDARG0000006279441
mid1 / midline 1 / O15344* / O70583* / E3 ubiquitin-protein ligase Midline-1 *ENSDARG0000006048222
mid2 / midline 2 / Q9UJV3*ENSDARG0000003487122
trim9 / tripartite motif containing 9 / Q8C7M3* / Q9C026* / E3 ubiquitin-protein ligase TRIM9 *ENSDARG0000003912321
TRIM67 / tripartite motif containing 67 / Q6ZTA4*ENSDARG0000010878720
fsd1l / fibronectin type III and SPRY domain containing 1-like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSDARG0000005943213
trim55a / tripartite motif containing 55a / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000002959613
trim101 / tripartite motif containing 101ENSDARG0000001826412
fsd1 / Q1LY10 / fibronectin type III and SPRY domain containing 1 / Q9BTV5*ENSDARG0000006201712
trim63b / tripartite motif containing 63b / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000008668511
trim55b / tripartite motif containing 55b / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000005815811
trim54 / tripartite motif containing 54 / Q9BYV2* / Q9ERP3* / Tripartite motif-containing protein 54 *ENSDARG0000002990711
trim63a / tripartite motif containing 63a / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000002802710


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR003961  Fibronectin type III
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR017903  COS domain
 IPR018957  Zinc finger, C3HC4 RING-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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