ENSDARG00000029907


Danio rerio

Features
Gene ID: ENSDARG00000029907
  
Biological name :trim54
  
Synonyms : trim54 / tripartite motif containing 54
  
Possible biological names infered from orthology : Q9BYV2 / Q9ERP3 / Tripartite motif-containing protein 54
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 38730291
Gene end: 38758797
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000061393
Ensembl peptide - ENSDARP00000120891
NCBI entrez gene - 563772     See in Manteia.
RefSeq - NM_001045025
RefSeq Peptide - NP_001038490
swissprot - Q5RHH1
swissprot - Q5RHH2
ZFIN ID - ZDB-GENE-041014-342
Ensembl - ENSDARG00000029907
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM54ENSGALG00000033203Gallus gallus
 Q9BYV2ENSG00000138100Homo sapiens
 Q9ERP3ENSMUSG00000062077Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim55b / tripartite motif containing 55b / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000005815855
trim55a / tripartite motif containing 55a / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000002959652
trim63b / tripartite motif containing 63b / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000008668549
trim63a / tripartite motif containing 63a / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000002802747
trim101 / tripartite motif containing 101ENSDARG0000001826443
trim36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSDARG0000006279427
mid2 / midline 2 / Q9UJV3*ENSDARG0000003487126
mid1 / midline 1 / O15344* / O70583* / E3 ubiquitin-protein ligase Midline-1 *ENSDARG0000006048226
TRIM67 / tripartite motif containing 67 / Q6ZTA4*ENSDARG0000010878725
trim46a / tripartite motif containing 46a / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000001236724
trim9 / tripartite motif containing 9 / Q8C7M3* / Q9C026* / E3 ubiquitin-protein ligase TRIM9 *ENSDARG0000003912323
trim46b / tripartite motif containing 46b / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000005864922
fsd1 / Q1LY10 / fibronectin type III and SPRY domain containing 1 / Q9BTV5*ENSDARG0000006201711
fsd1l / fibronectin type III and SPRY domain containing 1-like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSDARG0000005943211


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR033492  Tripartite motif-containing protein 54


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055001 muscle cell development IEA
 biological_processGO:0070507 regulation of microtubule cytoskeleton organization IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005874 microtubule IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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