ENSDARG00000086685


Danio rerio

Features
Gene ID: ENSDARG00000086685
  
Biological name :trim63b
  
Synonyms : trim63b / tripartite motif containing 63b
  
Possible biological names infered from orthology : Q969Q1 / TRIM63 / tripartite motif containing 63
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 23900703
Gene end: 23902215
  
Corresponding Affymetrix probe sets: Dr.24328.1.S1_at (Zebrafish Array)   NM_201095_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000109359
NCBI entrez gene - 394070     See in Manteia.
RefSeq - NM_201095
RefSeq Peptide - NP_957389
swissprot - B8JI86
ZFIN ID - ZDB-GENE-040426-1003
Ensembl - ENSDARG00000086685
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM63ENSGALG00000034107Gallus gallus
 Q969Q1ENSG00000158022Homo sapiens
 Trim63ENSMUSG00000028834Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim63a / tripartite motif containing 63a / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000002802766
trim54 / tripartite motif containing 54 / Q9BYV2* / Q9ERP3* / Tripartite motif-containing protein 54 *ENSDARG0000002990751
trim55a / tripartite motif containing 55a / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000002959648
trim55b / tripartite motif containing 55b / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000005815848
trim101 / tripartite motif containing 101ENSDARG0000001826445
trim36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSDARG0000006279429
mid2 / midline 2 / Q9UJV3*ENSDARG0000003487128
mid1 / midline 1 / O15344* / O70583* / E3 ubiquitin-protein ligase Midline-1 *ENSDARG0000006048228
trim46a / tripartite motif containing 46a / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000001236727
trim9 / tripartite motif containing 9 / Q8C7M3* / Q9C026* / E3 ubiquitin-protein ligase TRIM9 *ENSDARG0000003912326
TRIM67 / tripartite motif containing 67 / Q6ZTA4*ENSDARG0000010878725
trim46b / tripartite motif containing 46b / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000005864924
fsd1l / fibronectin type III and SPRY domain containing 1-like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSDARG0000005943214
fsd1 / Q1LY10 / fibronectin type III and SPRY domain containing 1 / Q9BTV5*ENSDARG0000006201712


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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