ENSDARG00000029596


Danio rerio

Features
Gene ID: ENSDARG00000029596
  
Biological name :trim55a
  
Synonyms : trim55a / tripartite motif containing 55a
  
Possible biological names infered from orthology : Q9BYV6 / TRIM55 / tripartite motif containing 55
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 42114310
Gene end: 42128714
  
Corresponding Affymetrix probe sets: Dr.5109.1.A1_at (Zebrafish Array)   NM_001002358_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000047054
NCBI entrez gene - 436631     See in Manteia.
RefSeq - NM_001002358
RefSeq Peptide - NP_001002358
swissprot - Q6DHS0
ZFIN ID - ZDB-GENE-040718-50
Ensembl - ENSDARG00000029596
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM55ENSGALG00000041327Gallus gallus
 Q9BYV6ENSG00000147573Homo sapiens
 Trim55ENSMUSG00000060913Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim55b / tripartite motif containing 55b / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000005815855
trim54 / tripartite motif containing 54 / Q9BYV2* / Q9ERP3* / Tripartite motif-containing protein 54 *ENSDARG0000002990742
trim101 / tripartite motif containing 101ENSDARG0000001826439
trim63b / tripartite motif containing 63b / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000008668538
trim63a / tripartite motif containing 63a / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG0000002802738
trim36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSDARG0000006279426
mid1 / midline 1 / O15344* / O70583* / E3 ubiquitin-protein ligase Midline-1 *ENSDARG0000006048224
mid2 / midline 2 / Q9UJV3*ENSDARG0000003487123
trim46a / tripartite motif containing 46a / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000001236722
trim46b / tripartite motif containing 46b / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000005864921
TRIM67 / tripartite motif containing 67 / Q6ZTA4*ENSDARG0000010878721
trim9 / tripartite motif containing 9 / Q8C7M3* / Q9C026* / E3 ubiquitin-protein ligase TRIM9 *ENSDARG0000003912320
fsd1l / fibronectin type III and SPRY domain containing 1-like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSDARG0000005943211
fsd1 / Q1LY10 / fibronectin type III and SPRY domain containing 1 / Q9BTV5*ENSDARG0000006201710


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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