ENSDARG00000062017


Danio rerio

Features
Gene ID: ENSDARG00000062017
  
Biological name :fsd1
  
Synonyms : fibronectin type III and SPRY domain containing 1 / fsd1 / Q1LY10
  
Possible biological names infered from orthology : Fibronectin type III and SPRY domain-containing protein 1 / Q7TPM6 / Q9BTV5
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 18624658
Gene end: 18647363
  
Corresponding Affymetrix probe sets: Dr.16576.1.A1_at (Zebrafish Array)   NM_001045117_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000083574
NCBI entrez gene - 566722     See in Manteia.
RefSeq - NM_001045117
RefSeq Peptide - NP_001038582
swissprot - G1K2S3
swissprot - B3DG96
swissprot - Q1LY10
ZFIN ID - ZDB-GENE-060503-218
Ensembl - ENSDARG00000062017
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000032938Gallus gallus
 FSD1ENSG00000105255Homo sapiens
 Fsd1ENSMUSG00000011589Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
fsd1l / fibronectin type III and SPRY domain containing 1-like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSDARG0000005943257
mid1 / midline 1 / O15344* / O70583* / E3 ubiquitin-protein ligase Midline-1 *ENSDARG0000006048226
mid2 / midline 2 / Q9UJV3*ENSDARG0000003487125
trim36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSDARG0000006279421
trim46a / tripartite motif containing 46a / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000001236720
TRIM67 / tripartite motif containing 67 / Q6ZTA4*ENSDARG0000010878719
trim9 / tripartite motif containing 9 / Q8C7M3* / Q9C026* / E3 ubiquitin-protein ligase TRIM9 *ENSDARG0000003912319
trim46b / tripartite motif containing 46b / TRIM46* / Q7TNM2* / Q7Z4K8* / tripartite motif containing 46*ENSDARG0000005864918
trim55b / tripartite motif containing 55b / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG0000005815810
trim101 / tripartite motif containing 101ENSDARG0000001826410
trim55a / tripartite motif containing 55a / Q9BYV6* / TRIM55* / tripartite motif containing 55*ENSDARG000000295969
trim63a / tripartite motif containing 63a / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG000000280278
trim63b / tripartite motif containing 63b / Q969Q1* / TRIM63* / tripartite motif containing 63*ENSDARG000000866858
trim54 / tripartite motif containing 54 / Q9BYV2* / Q9ERP3* / Tripartite motif-containing protein 54 *ENSDARG000000299078


Protein motifs (from Interpro)
Interpro ID Name
 IPR001870  B30.2/SPRY domain
 IPR003649  B-box, C-terminal
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR003961  Fibronectin type III
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR017903  COS domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0032154 cleavage furrow IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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