ENSG00000163462


Homo sapiens

Features
Gene ID: ENSG00000163462
  
Biological name :TRIM46
  
Synonyms : Q7Z4K8 / TRIM46 / tripartite motif containing 46
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q22
Gene start: 155173787
Gene end: 155184971
  
Corresponding Affymetrix probe sets: 220909_at (Human Genome U133 Plus 2.0 Array)   238147_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000440254
Ensembl peptide - ENSP00000376245
Ensembl peptide - ENSP00000442719
Ensembl peptide - ENSP00000478669
Ensembl peptide - ENSP00000334657
Ensembl peptide - ENSP00000357366
Ensembl peptide - ENSP00000357367
Ensembl peptide - ENSP00000357369
NCBI entrez gene - 80128     See in Manteia.
OMIM - 600986
RefSeq - XM_017002393
RefSeq - NM_001256599
RefSeq - NM_001256600
RefSeq - NM_001256601
RefSeq - NM_001282378
RefSeq - NM_001282379
RefSeq - NM_025058
RefSeq - XM_011510002
RefSeq Peptide - NP_001269307
RefSeq Peptide - NP_001269308
RefSeq Peptide - NP_079334
RefSeq Peptide - NP_001243530
RefSeq Peptide - NP_001243528
RefSeq Peptide - NP_001243529
swissprot - Q7Z4K8
swissprot - A0A0A0MS35
swissprot - F5GYK0
swissprot - Q5VT61
swissprot - A0A087WUH1
Ensembl - ENSG00000163462
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim46aENSDARG00000012367Danio rerio
 trim46bENSDARG00000058649Danio rerio
 Q7TNM2ENSMUSG00000042766Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9NQ86 / TRIM36 / tripartite motif containing 36ENSG0000015250342
MID1 / O15344 / midline 1ENSG0000010187123
MID2 / Q9UJV3 / midline 2ENSG0000008056122
TRIM9 / Q9C026 / tripartite motif containing 9ENSG0000010050522
Q6ZTA4 / TRIM67 / tripartite motif containing 67ENSG0000011928321
Q9BYV6 / TRIM55 / tripartite motif containing 55ENSG0000014757317
FSD1 / Q9BTV5 / fibronectin type III and SPRY domain containing 1ENSG0000010525515
FSD1L / Q9BXM9 / fibronectin type III and SPRY domain containing 1 likeENSG0000010670115
Q969Q1 / TRIM63 / tripartite motif containing 63ENSG0000015802214
Q9BYV2 / TRIM54 / tripartite motif containing 54ENSG0000013810014


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003961  Fibronectin type III
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR035731  TRIM46, PRY/SPRY domain
 IPR036116  Fibronectin type III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IEA
 biological_processGO:0001578 microtubule bundle formation IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0048490 anterograde synaptic vesicle transport IEA
 biological_processGO:0099612 protein localization to axon IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043194 axon initial segment IEA
 cellular_componentGO:1904115 axon cytoplasm IEA
 cellular_componentGO:1990769 proximal neuron projection IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Interferon gamma signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr