ENSG00000100505


Homo sapiens

Features
Gene ID: ENSG00000100505
  
Biological name :TRIM9
  
Synonyms : Q9C026 / TRIM9 / tripartite motif containing 9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q22.1
Gene start: 50975262
Gene end: 51096061
  
Corresponding Affymetrix probe sets: 209859_at (Human Genome U133 Plus 2.0 Array)   230280_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000298355
Ensembl peptide - ENSP00000342970
Ensembl peptide - ENSP00000353561
NCBI entrez gene - 114088     See in Manteia.
OMIM - 606555
RefSeq - XM_017020950
RefSeq - NM_015163
RefSeq - NM_052978
RefSeq - XM_017020947
RefSeq - XM_017020948
RefSeq - XM_017020949
RefSeq - XM_005267301
RefSeq - XM_005267302
RefSeq - XM_006720018
RefSeq - XM_011536389
RefSeq - XM_017020943
RefSeq - XM_017020944
RefSeq - XM_017020945
RefSeq - XM_017020946
RefSeq Peptide - NP_443210
RefSeq Peptide - NP_055978
swissprot - Q9C026
Ensembl - ENSG00000100505
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim9ENSDARG00000039123Danio rerio
 TRIM9ENSGALG00000012367Gallus gallus
 Trim9ENSMUSG00000021071Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6ZTA4 / TRIM67 / tripartite motif containing 67ENSG0000011928369
MID2 / Q9UJV3 / midline 2ENSG0000008056125
MID1 / O15344 / midline 1ENSG0000010187125
Q7Z4K8 / TRIM46 / tripartite motif containing 46ENSG0000016346224
Q9NQ86 / TRIM36 / tripartite motif containing 36ENSG0000015250323
FSD1 / Q9BTV5 / fibronectin type III and SPRY domain containing 1ENSG0000010525515
FSD1L / Q9BXM9 / fibronectin type III and SPRY domain containing 1 likeENSG0000010670115
Q9BYV6 / TRIM55 / tripartite motif containing 55ENSG0000014757314
Q969Q1 / TRIM63 / tripartite motif containing 63ENSG0000015802213
Q9BYV2 / TRIM54 / tripartite motif containing 54ENSG0000013810012


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003649  B-box, C-terminal
 IPR003877  SPRY domain
 IPR003961  Fibronectin type III
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR035029  E3 ubiquitin-protein ligase TRIM9
 IPR036116  Fibronectin type III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016079 synaptic vesicle exocytosis IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035544 negative regulation of SNARE complex assembly IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0045955 negative regulation of calcium ion-dependent exocytosis IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0008021 synaptic vesicle IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0000149 SNARE binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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