ENSMUSG00000042766


Mus musculus

Features
Gene ID: ENSMUSG00000042766
  
Biological name :Trim46
  
Synonyms : Q7TNM2 / Trim46 / tripartite motif-containing 46
  
Possible biological names infered from orthology : Q7Z4K8
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: F1
Gene start: 89234177
Gene end: 89246309
  
Corresponding Affymetrix probe sets: 10499514 (MoGene1.0st)   1460568_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000123533
Ensembl peptide - ENSMUSP00000088442
Ensembl peptide - ENSMUSP00000103088
Ensembl peptide - ENSMUSP00000119270
Ensembl peptide - ENSMUSP00000036053
NCBI entrez gene - 360213     See in Manteia.
MGI - MGI:2673000
RefSeq - XM_011240152
RefSeq - NM_001039466
RefSeq - NM_183037
RefSeq - XM_006501613
RefSeq - XM_006501614
RefSeq - XM_006501615
RefSeq - XM_006501616
RefSeq Peptide - NP_001034555
RefSeq Peptide - NP_898858
swissprot - D3YYF9
swissprot - Q3TC52
swissprot - D3YXA6
swissprot - Q7TNM2
swissprot - E9PUI3
Ensembl - ENSMUSG00000042766
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim46aENSDARG00000012367Danio rerio
 trim46bENSDARG00000058649Danio rerio
 Q7Z4K8ENSG00000163462Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q80WG7 / Trim36 / E3 ubiquitin-protein ligase Trim36 / Q9NQ86* / tripartite motif containing 36*ENSMUSG0000003394942
Mid1 / O70583 / E3 ubiquitin-protein ligase Midline-1 / O15344* / midline 1*ENSMUSG0000003529923
Mid2 / Mus musculus midline 2 (Mid2), transcript variant 2, mRNA. / Q9UJV3* / midline 2*ENSMUSG0000000026622
Trim9 / Q8C7M3 / E3 ubiquitin-protein ligase TRIM9 / Q9C026* / tripartite motif containing 9*ENSMUSG0000002107122
Q505D9 / Trim67 / Tripartite motif-containing protein 67 / Q6ZTA4* / tripartite motif containing 67*ENSMUSG0000003691321
Trim55 / tripartite motif-containing 55 / Q9BYV6*ENSMUSG0000006091318
Trim63 / tripartite motif-containing 63 / Q969Q1*ENSMUSG0000002883415
Q9ERP3 / Trim54 / Tripartite motif-containing protein 54 / Q9BYV2* / tripartite motif containing 54*ENSMUSG0000006207714
Fsd1 / Q7TPM6 / Fibronectin type III and SPRY domain-containing protein 1 / Q9BTV5* / fibronectin type III and SPRY domain containing 1*ENSMUSG0000001158914
Fsd1l / Q8BYN5 / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA. / Q9BXM9* / fibronectin type III and SPRY domain containing 1 like*ENSMUSG0000005475214


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003961  Fibronectin type III
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR035731  TRIM46, PRY/SPRY domain
 IPR036116  Fibronectin type III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IMP
 biological_processGO:0001578 microtubule bundle formation ISO
 biological_processGO:0001764 neuron migration IMP
 biological_processGO:0007409 axonogenesis IMP
 biological_processGO:0048490 anterograde synaptic vesicle transport IMP
 biological_processGO:0099612 protein localization to axon IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0015630 microtubule cytoskeleton ISO
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043194 axon initial segment IDA
 cellular_componentGO:1904115 axon cytoplasm IEA
 cellular_componentGO:1990769 proximal neuron projection IMP
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008017 microtubule binding ISO
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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