ENSGALG00000042647


Gallus gallus

Features
Gene ID: ENSGALG00000042647
  
Biological name :CNGB1
  
Synonyms : CNGB1 / cyclic nucleotide gated channel beta 1
  
Possible biological names infered from orthology : Q14028
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 510007
Gene end: 519341
  
Corresponding Affymetrix probe sets: GgaAffx.652.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044272
Ensembl peptide - ENSGALP00000048452
swissprot - A0A1D5NV99
swissprot - A0A1D5P6X1
Ensembl - ENSGALG00000042647
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cngb1aENSDARG00000068242Danio rerio
 si:dkey-44k1.5ENSDARG00000042107Danio rerio
 CNGB1ENSG00000070729Homo sapiens
 Cngb1ENSMUSG00000031789Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CNGB3 / cyclic nucleotide gated channel beta 3 / Q9JJZ9* / Q9NQW8* / Cyclic nucleotide-gated cation channel beta-3 *ENSGALG0000003764440
CNGA3 / cyclic nucleotide-gated channel cone photoreceptor subunit alpha / Q16281* / Q9JJZ8* / cyclic nucleotide gated channel alpha 3* / Cyclic nucleotide-gated cation channel alpha-3 *ENSGALG0000003982620
CNGA1 / Q90980 / Cyclic nucleotide-gated channel rod photoreceptor subunit alpha / P29973* / P29974* / cGMP-gated cation channel alpha-1 * / cyclic nucleotide gated channel alpha 1*ENSGALG0000001413619
CNGA2 / cyclic nucleotide gated channel alpha 2 / Q16280* / Q62398* / Cyclic nucleotide-gated olfactory channel *ENSGALG0000000728216
HCN4 / hyperpolarization activated cyclic nucleotide gated potassium channel 4 / Q9Y3Q4*ENSGALG0000000176415
HCN2 / hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 / O88703* / Q9UL51* / Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 *ENSGALG0000000134214
HCN3 / hyperpolarization activated cyclic nucleotide gated potassium channel 3 / O88705* / Q9P1Z3* / Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 *ENSGALG0000003365313
CNGA4 / cyclic nucleotide gated channel alpha 4 / Q3UW12* / Q8IV77* / Cyclic nucleotide-gated cation channel alpha-4 *ENSGALG0000002270413
HCN1 / hyperpolarization activated cyclic nucleotide gated potassium channel 1 / O60741* / O88704* / Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 *ENSGALG0000001487513


Protein motifs (from Interpro)
Interpro ID Name
 IPR000595  Cyclic nucleotide-binding domain
 IPR014710  RmlC-like jelly roll fold
 IPR018488  Cyclic nucleotide-binding, conserved site
 IPR018490  Cyclic nucleotide-binding-like
 IPR032944  Cyclic nucleotide-gated cation channel beta-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001895 retina homeostasis IEA
 biological_processGO:0006812 cation transport IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0007608 sensory perception of smell IEA
 biological_processGO:0033365 protein localization to organelle IEA
 biological_processGO:0035845 photoreceptor cell outer segment organization IEA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0050908 detection of light stimulus involved in visual perception IEA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:1902495 transmembrane transporter complex IEA
 molecular_functionGO:0005221 intracellular cyclic nucleotide activated cation channel activity IEA
 molecular_functionGO:0005223 intracellular cGMP activated cation channel activity IEA
 molecular_functionGO:0030553 cGMP binding IEA
 molecular_functionGO:0043855 cyclic nucleotide-gated ion channel activity IEA


Pathways (from Reactome)
Pathway description
Activation of the phototransduction cascade
Inactivation, recovery and regulation of the phototransduction cascade
VxPx cargo-targeting to cilium


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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