ENSG00000070729


Homo sapiens

Features
Gene ID: ENSG00000070729
  
Biological name :CNGB1
  
Synonyms : CNGB1 / cyclic nucleotide gated channel beta 1 / Q14028
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q21
Gene start: 57882340
Gene end: 57971116
  
Corresponding Affymetrix probe sets: 207342_at (Human Genome U133 Plus 2.0 Array)   210769_at (Human Genome U133 Plus 2.0 Array)   211099_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495566
Ensembl peptide - ENSP00000251102
Ensembl peptide - ENSP00000455708
Ensembl peptide - ENSP00000455964
Ensembl peptide - ENSP00000311670
Ensembl peptide - ENSP00000454633
NCBI entrez gene - 1258     See in Manteia.
OMIM - 600724
RefSeq - NM_001135639
RefSeq - NM_001297
RefSeq - NM_001286130
RefSeq Peptide - NP_001129111
RefSeq Peptide - NP_001288
RefSeq Peptide - NP_001273059
swissprot - Q14028
swissprot - H3BQC3
swissprot - H3BQW3
Ensembl - ENSG00000070729
  
Related genetic diseases (OMIM): 613767 - Retinitis pigmentosa 45, 613767
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cngb1aENSDARG00000068242Danio rerio
 si:dkey-44k1.5ENSDARG00000042107Danio rerio
 CNGB1ENSGALG00000042647Gallus gallus
 Cngb1ENSMUSG00000031789Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CNGB3 / Q9NQW8 / cyclic nucleotide gated channel beta 3ENSG0000017028931
CNGA3 / Q16281 / cyclic nucleotide gated channel alpha 3ENSG0000014419116
CNGA1 / P29973 / cyclic nucleotide gated channel alpha 1ENSG0000019851515
CNGA2 / Q16280 / cyclic nucleotide gated channel alpha 2ENSG0000018386215
HCN4 / Q9Y3Q4 / hyperpolarization activated cyclic nucleotide gated potassium channel 4ENSG0000013862214
CNGA4 / Q8IV77 / cyclic nucleotide gated channel alpha 4ENSG0000013225913
HCN1 / O60741 / hyperpolarization activated cyclic nucleotide gated potassium channel 1ENSG0000016458811
HCN3 / Q9P1Z3 / hyperpolarization activated cyclic nucleotide gated potassium channel 3ENSG0000014363011
HCN2 / Q9UL51 / hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2ENSG0000009982211


Protein motifs (from Interpro)
Interpro ID Name
 IPR000595  Cyclic nucleotide-binding domain
 IPR014710  RmlC-like jelly roll fold
 IPR018488  Cyclic nucleotide-binding, conserved site
 IPR018490  Cyclic nucleotide-binding-like
 IPR032944  Cyclic nucleotide-gated cation channel beta-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001895 retina homeostasis IMP
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006812 cation transport IDA
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0007602 phototransduction IEA
 biological_processGO:0007608 sensory perception of smell IEA
 biological_processGO:0016056 rhodopsin mediated signaling pathway TAS
 biological_processGO:0022400 regulation of rhodopsin mediated signaling pathway TAS
 biological_processGO:0033365 protein localization to organelle IEA
 biological_processGO:0035845 photoreceptor cell outer segment organization IEA
 biological_processGO:0042391 regulation of membrane potential IBA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0050908 detection of light stimulus involved in visual perception IMP
 biological_processGO:0051290 protein heterotetramerization IEA
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IEA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0017071 intracellular cyclic nucleotide activated cation channel complex IEA
 cellular_componentGO:0030660 Golgi-associated vesicle membrane TAS
 cellular_componentGO:0043195 terminal bouton IEA
 cellular_componentGO:0060170 ciliary membrane TAS
 cellular_componentGO:1902495 transmembrane transporter complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005221 intracellular cyclic nucleotide activated cation channel activity IEA
 molecular_functionGO:0005222 intracellular cAMP activated cation channel activity IEA
 molecular_functionGO:0005223 intracellular cGMP activated cation channel activity IDA
 molecular_functionGO:0005249 voltage-gated potassium channel activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015276 ligand-gated ion channel activity TAS
 molecular_functionGO:0030552 cAMP binding IEA
 molecular_functionGO:0030553 cGMP binding IDA
 molecular_functionGO:0043855 cyclic nucleotide-gated ion channel activity IEA


Pathways (from Reactome)
Pathway description
Activation of the phototransduction cascade
Inactivation, recovery and regulation of the phototransduction cascade
VxPx cargo-targeting to cilium


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000608 Macular degeneration 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007737 Bony spicule pigmentary retinopathy 
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 HP:0007994 Peripheral visual field loss 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000132259 CNGA4 / Q8IV77 / cyclic nucleotide gated channel alpha 4  / complex
 ENSG00000090565 O75154 / RAB11FIP3 / RAB11 family interacting protein 3  / complex / reaction
 ENSG00000198668 CALM1 / P0DP23 / calmodulin 1  / reaction / complex
 ENSG00000103769 P62491 / RAB11A / RAB11A, member RAS oncogene family  / complex / reaction
 ENSG00000127328 Q96QF0 / RAB3IP / RAB3A interacting protein  / complex / reaction
 ENSG00000198515 CNGA1 / P29973 / cyclic nucleotide gated channel alpha 1  / complex
 ENSG00000183862 CNGA2 / Q16280 / cyclic nucleotide gated channel alpha 2  / complex
 ENSG00000167461 RAB8A / P61006 / RAB8A, member RAS oncogene family  / reaction / complex
 ENSG00000168374 ARF4 / P18085 / ADP ribosylation factor 4  / reaction / complex
 ENSG00000153317 ASAP1 / Q9ULH1 / ArfGAP with SH3 domain, ankyrin repeat and PH domain 1  / complex / reaction






 

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