ENSG00000144191


Homo sapiens

Features
Gene ID: ENSG00000144191
  
Biological name :CNGA3
  
Synonyms : CNGA3 / cyclic nucleotide gated channel alpha 3 / Q16281
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q11.2
Gene start: 98346155
Gene end: 98398601
  
Corresponding Affymetrix probe sets: 207261_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000272602
Ensembl peptide - ENSP00000377140
Ensembl peptide - ENSP00000386761
Ensembl peptide - ENSP00000410070
NCBI entrez gene - 1261     See in Manteia.
OMIM - 600053
RefSeq - XM_011510554
RefSeq - NM_001079878
RefSeq - NM_001298
RefSeq - XM_006712243
RefSeq Peptide - NP_001073347
RefSeq Peptide - NP_001289
swissprot - Q16281
Ensembl - ENSG00000144191
  
Related genetic diseases (OMIM): 216900 - Achromatopsia 2, 216900
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cnga3aENSDARG00000070726Danio rerio
 cnga3bENSDARG00000012297Danio rerio
 CNGA3ENSGALG00000039826Gallus gallus
 Cnga3ENSMUSG00000026114Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CNGA1 / P29973 / cyclic nucleotide gated channel alpha 1ENSG0000019851561
CNGA2 / Q16280 / cyclic nucleotide gated channel alpha 2ENSG0000018386260
CNGA4 / Q8IV77 / cyclic nucleotide gated channel alpha 4ENSG0000013225942
CNGB1 / Q14028 / cyclic nucleotide gated channel beta 1ENSG0000007072929
CNGB3 / Q9NQW8 / cyclic nucleotide gated channel beta 3ENSG0000017028928
HCN4 / Q9Y3Q4 / hyperpolarization activated cyclic nucleotide gated potassium channel 4ENSG0000013862223
HCN1 / O60741 / hyperpolarization activated cyclic nucleotide gated potassium channel 1ENSG0000016458822
HCN2 / Q9UL51 / hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2ENSG0000009982221
HCN3 / Q9P1Z3 / hyperpolarization activated cyclic nucleotide gated potassium channel 3ENSG0000014363020


Protein motifs (from Interpro)
Interpro ID Name
 IPR000595  Cyclic nucleotide-binding domain
 IPR005821  Ion transport domain
 IPR014710  RmlC-like jelly roll fold
 IPR018488  Cyclic nucleotide-binding, conserved site
 IPR018490  Cyclic nucleotide-binding-like
 IPR032406  Cyclic nucleotide-gated channel, C-terminal leucine zipper domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006812 cation transport IMP
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0031960 response to corticosteroid IEA
 biological_processGO:0032026 response to magnesium ion IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0042391 regulation of membrane potential IBA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0051591 response to cAMP IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0042622 photoreceptor outer segment membrane IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:1902495 transmembrane transporter complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005223 intracellular cGMP activated cation channel activity IEA
 molecular_functionGO:0005249 voltage-gated potassium channel activity IBA
 molecular_functionGO:0008022 protein C-terminus binding IEA
 molecular_functionGO:0015276 ligand-gated ion channel activity TAS
 molecular_functionGO:0030553 cGMP binding IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000540 Hypermetropia 
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 HP:0000551 Abnormal color vision 
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 HP:0000577 Exotropia 
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 HP:0000603 Central scotoma 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0007641 Secondary dyschromatopsia 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007722 Loss of retinal pigment epithelium 
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 HP:0007750 Foveal hypoplasia 
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 HP:0007793 Bilateral macular retinal pigment epithelial mottling 
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 HP:0007843 Attenuation of retinal blood vessels 
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 HP:0007939 Almost complete colorblindness except ability to see blue 
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 HP:0011516 Rod monochromacy "A condition where the retina contains no functional cone cells, so that in addition to the absence of color discrimination, vision in lights of normal intensity is difficult." [DDD:gblack]
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 HP:0012043 Pendular nystagmus "Rhythmic, involuntary sinusoidal oscillations of one or both eyes. The waveform of pendular nystagmus may occur in any direction." [HPO:probinson]
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 HP:0012047 Hemeralopia "A visual defect characterized by the inability to see as clearly in bright light as in dim light. The word hemeralopia literally means day blindness." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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