ENSG00000170289


Homo sapiens

Features
Gene ID: ENSG00000170289
  
Biological name :CNGB3
  
Synonyms : CNGB3 / cyclic nucleotide gated channel beta 3 / Q9NQW8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q21.3
Gene start: 86553977
Gene end: 86743675
  
Corresponding Affymetrix probe sets: 220304_s_at (Human Genome U133 Plus 2.0 Array)   222959_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000316605
Ensembl peptide - ENSP00000428329
NCBI entrez gene - 54714     See in Manteia.
OMIM - 605080
RefSeq - XM_011517138
RefSeq - NM_019098
RefSeq Peptide - NP_061971
swissprot - Q9NQW8
swissprot - H0YAZ4
Ensembl - ENSG00000170289
  
Related genetic diseases (OMIM): 248200 - Macular degeneration, juvenile, 248200
  262300 - Achromatopsia 3, 262300
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cngb3.1ENSDARG00000101225Danio rerio
 cngb3.2ENSDARG00000101368Danio rerio
 CNGB3ENSGALG00000037644Gallus gallus
 Cngb3ENSMUSG00000056494Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CNGB1 / Q14028 / cyclic nucleotide gated channel beta 1ENSG0000007072948
CNGA3 / Q16281 / cyclic nucleotide gated channel alpha 3ENSG0000014419124
CNGA1 / P29973 / cyclic nucleotide gated channel alpha 1ENSG0000019851523
CNGA2 / Q16280 / cyclic nucleotide gated channel alpha 2ENSG0000018386222
CNGA4 / Q8IV77 / cyclic nucleotide gated channel alpha 4ENSG0000013225919
HCN4 / Q9Y3Q4 / hyperpolarization activated cyclic nucleotide gated potassium channel 4ENSG0000013862218
HCN2 / Q9UL51 / hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2ENSG0000009982216
HCN1 / O60741 / hyperpolarization activated cyclic nucleotide gated potassium channel 1ENSG0000016458816
HCN3 / Q9P1Z3 / hyperpolarization activated cyclic nucleotide gated potassium channel 3ENSG0000014363015


Protein motifs (from Interpro)
Interpro ID Name
 IPR000595  Cyclic nucleotide-binding domain
 IPR014710  RmlC-like jelly roll fold
 IPR018488  Cyclic nucleotide-binding, conserved site
 IPR018490  Cyclic nucleotide-binding-like
 IPR032943  Cyclic nucleotide-gated cation channel beta-3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006812 cation transport IDA
 biological_processGO:0007165 signal transduction NAS
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0042391 regulation of membrane potential IBA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:1902495 transmembrane transporter complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005221 intracellular cyclic nucleotide activated cation channel activity IEA
 molecular_functionGO:0005223 intracellular cGMP activated cation channel activity IEA
 molecular_functionGO:0005249 voltage-gated potassium channel activity IBA
 molecular_functionGO:0030553 cGMP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000493 Abnormality of the fovea 
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 HP:0000505 Impaired vision 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000540 Hypermetropia 
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 HP:0000551 Abnormal color vision 
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 HP:0000577 Exotropia 
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 HP:0000603 Central scotoma 
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 HP:0000608 Macular degeneration 
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 HP:0000610 Abnormality of the choroid 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000649 Abnormality of vision evoked potentials 
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 HP:0000662 Night blindness 
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 HP:0001141 Severe visual impairment 
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 HP:0007641 Secondary dyschromatopsia 
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 HP:0007663 Decreased central vision 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007704 Abnormal eye movements, paroxysmal 
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 HP:0007722 Loss of retinal pigment epithelium 
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 HP:0007750 Foveal hypoplasia 
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 HP:0007793 Bilateral macular retinal pigment epithelial mottling 
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 HP:0007803 Congenital complete achromatopsia 
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 HP:0007811 Horizontal pendular nystagmus "Nystagmus consisting of horizontal to-and-fro eye movements of equal velocity." [HPO:curators]
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 HP:0007814 Salt and pepper retinopathy, early 
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 HP:0007843 Attenuation of retinal blood vessels 
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 HP:0007939 Almost complete colorblindness except ability to see blue 
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 HP:0008002 Macular pigmentary changes 
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 HP:0008035 Retinitis pigmentosa inversa 
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 HP:0008059 Aplasia/Hypoplasia of the macula 
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 HP:0011003 Severe Myopia 
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 HP:0011504 Bull s eye maculopathy "Progressive maculopathy characterized by concentric regions of hyper- and hypo-pigmentation." [DDD:gblack]
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 HP:0011516 Rod monochromacy "A condition where the retina contains no functional cone cells, so that in addition to the absence of color discrimination, vision in lights of normal intensity is difficult." [DDD:gblack]
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 HP:0012043 Pendular nystagmus "Rhythmic, involuntary sinusoidal oscillations of one or both eyes. The waveform of pendular nystagmus may occur in any direction." [HPO:probinson]
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 HP:0030329 Retinal thinning "Reduced anteroposterior thickness of the retina. This phenotype can be appreciated by retinal optical coherence tomography (OCT)." [HPO:probinson]
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 HP:0030500 Yellow/white lesions of the macula 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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