ENSDARG00000068242


Danio rerio

Features
Gene ID: ENSDARG00000068242
  
Biological name :cngb1a
  
Synonyms : cngb1a / cyclic nucleotide gated channel beta 1a
  
Possible biological names infered from orthology : CNGB1 / cyclic nucleotide gated channel beta 1 / Q14028
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 45483282
Gene end: 45519748
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000117726
Ensembl peptide - ENSDARP00000154080
swissprot - F1QZH8
ZFIN ID - ZDB-GENE-050419-164
Ensembl - ENSDARG00000068242
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNGB1ENSGALG00000042647Gallus gallus
 CNGB1ENSG00000070729Homo sapiens
 Cngb1ENSMUSG00000031789Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-44k1.5 / CNGB1* / Q14028* / cyclic nucleotide gated channel beta 1*ENSDARG0000004210755
cngb3.1 / cyclic nucleotide gated channel beta 3, tandem duplicate 1 / CNGB3* / Q9JJZ9* / Q9NQW8* / cyclic nucleotide gated channel beta 3* / Cyclic nucleotide-gated cation channel beta-3 *ENSDARG0000010122539
cngb3.2 / cyclic nucleotide gated channel beta 3, tandem duplicate 2 / CNGB3* / Q9JJZ9* / Q9NQW8* / cyclic nucleotide gated channel beta 3* / Cyclic nucleotide-gated cation channel beta-3 *ENSDARG0000010136837
cnga5 / cyclic nucleotide gated channel alpha 5 / CNGA2* / Q62398* / Q16280* / cyclic nucleotide gated channel alpha 2* / Cyclic nucleotide-gated olfactory channel *ENSDARG0000010296823
cnga3a / cyclic nucleotide gated channel alpha 3a / CNGA3* / Q16281* / Q9JJZ8* / cyclic nucleotide gated channel alpha 3* / Cyclic nucleotide-gated cation channel alpha-3 *ENSDARG0000007072623
cnga2 / cyclic nucleotide gated channel alpha 2 / Q16280*ENSDARG0000010043623
cnga3b / cyclic nucleotide gated channel alpha 3b / CNGA3* / Q16281* / Q9JJZ8* / cyclic nucleotide gated channel alpha 3* / Cyclic nucleotide-gated cation channel alpha-3 *ENSDARG0000001229721
cnga1 / cyclic nucleotide gated channel alpha 1 / P29973* / P29974* / cGMP-gated cation channel alpha-1 *ENSDARG0000001212521
si:dkey-22i16.2 / CNGA1* / P29973* / P29974* / cGMP-gated cation channel alpha-1 * / cyclic nucleotide gated channel alpha 1*ENSDARG0000002989821
cnga4 / cyclic nucleotide gated channel alpha 4 / Q3UW12* / Q8IV77* / Cyclic nucleotide-gated cation channel alpha-4 *ENSDARG0000006938320
hcn4 / hyperpolarization activated cyclic nucleotide-gated potassium channel 4 / Q9Y3Q4*ENSDARG0000006168517
hcn1 / hyperpolarization activated cyclic nucleotide-gated potassium channel 1 / O60741* / O88704* / Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 *ENSDARG0000010448015
hcn2b / hyperpolarization activated cyclic nucleotide-gated potassium channel 2bENSDARG0000006166515
hcn4l / hyperpolarization activated cyclic nucleotide-gated potassium channel 4l / HCN4* / Q9Y3Q4* / hyperpolarization activated cyclic nucleotide gated potassium channel 4*ENSDARG0000007441914
hcn3 / hyperpolarization activated cyclic nucleotide-gated potassium channel 3 / O88705* / Q9P1Z3* / Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 *ENSDARG0000002719213
si:rp71-68n21.12ENSDARG0000007738211
CABZ01086574.1 / HCN4* / Q9Y3Q4* / hyperpolarization activated cyclic nucleotide gated potassium channel 4*ENSDARG000001164045


Protein motifs (from Interpro)
Interpro ID Name
 IPR000595  Cyclic nucleotide-binding domain
 IPR014710  RmlC-like jelly roll fold
 IPR018488  Cyclic nucleotide-binding, conserved site
 IPR018490  Cyclic nucleotide-binding-like
 IPR032944  Cyclic nucleotide-gated cation channel beta-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005221 intracellular cyclic nucleotide activated cation channel activity IEA


Pathways (from Reactome)
Pathway description
Activation of the phototransduction cascade
Inactivation, recovery and regulation of the phototransduction cascade
VxPx cargo-targeting to cilium


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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