ENSGALG00000042871


Gallus gallus

Features
Gene ID: ENSGALG00000042871
  
Biological name :SLIT1
  
Synonyms : SLIT1 / slit homolog 1 protein precursor
  
Possible biological names infered from orthology : O75093 / Q80TR4 / slit guidance ligand 1 / Slit homolog 1 protein
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 22380435
Gene end: 22411706
  
Corresponding Affymetrix probe sets: Gga.2156.2.S1_at (Chicken Array)   GgaAffx.4754.1.S1_at (Chicken Array)   GgaAffx.4754.1.S1_s_at (Chicken Array)   GgaAffx.4754.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052901
NCBI entrez gene - 395293     See in Manteia.
RefSeq - NM_001277336
RefSeq Peptide - NP_001264265
swissprot - A0A1D5PJA9
Ensembl - ENSGALG00000042871
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slit1aENSDARG00000044954Danio rerio
 slit1bENSDARG00000099446Danio rerio
 SLIT1ENSG00000187122Homo sapiens
 Slit1ENSMUSG00000025020Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SLIT2 / slit homolog 2 protein precursor / O94813* / Q9R1B9* / slit guidance ligand 2*ENSGALG0000004112166
SLIT3 / slit guidance ligand 3 / O75094* / Q9WVB4* / Slit homolog 3 protein *ENSGALG0000000191658
CRB2 / crumbs 2, cell polarity complex component / 2 * / Q5IJ48* / Q80YA8*ENSGALG0000000116914
DNER / delta/notch like EGF repeat containing / Q8JZM4* / Q8NFT8* / Delta and Notch-like epidermal growth factor-related receptor *ENSGALG000000029589
CRB1 / crumbs 1, cell polarity complex component / 1 * / P82279* / Q8VHS2*ENSGALG000000022877
DLK1 / delta like non-canonical Notch ligand 1 / P80370*ENSGALG000000112446
DLK2 / delta like non-canonical Notch ligand 2 / 2 * / Q6UY11* / Q8K1E3*ENSGALG000000103866


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR000742  EGF-like domain
 IPR001611  Leucine-rich repeat
 IPR001791  Laminin G domain
 IPR001881  EGF-like calcium-binding domain
 IPR003591  Leucine-rich repeat, typical subtype
 IPR006207  Cystine knot, C-terminal
 IPR013032  EGF-like, conserved site
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR018097  EGF-like calcium-binding, conserved site
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007097 nuclear migration IEA
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0007411 axon guidance IEA
 biological_processGO:0008045 motor neuron axon guidance IEA
 biological_processGO:0021772 olfactory bulb development IEA
 biological_processGO:0022028 tangential migration from the subventricular zone to the olfactory bulb IEA
 biological_processGO:0022029 telencephalon cell migration IEA
 biological_processGO:0031290 retinal ganglion cell axon guidance IEA
 biological_processGO:0033563 dorsal/ventral axon guidance IEA
 biological_processGO:0048812 neuron projection morphogenesis IEA
 biological_processGO:0048846 axon extension involved in axon guidance IEA
 biological_processGO:0050919 negative chemotaxis IEA
 cellular_componentGO:0005615 extracellular space IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0048495 Roundabout binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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