ENSGALG00000043178


Gallus gallus

Features
Gene ID: ENSGALG00000043178
  
Biological name :SBF1
  
Synonyms : SBF1 / SET binding factor 1
  
Possible biological names infered from orthology : O95248 / Q6ZPE2
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 573471
Gene end: 635071
  
Corresponding Affymetrix probe sets: GgaAffx.5186.1.S1_at (Chicken Array)   GgaAffx.7895.1.S1_at (Chicken Array)   GgaAffx.7895.1.S1_s_at (Chicken Array)   GgaAffx.8776.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044257
Ensembl peptide - ENSGALP00000056033
Ensembl peptide - ENSGALP00000051233
Ensembl peptide - ENSGALP00000048635
NCBI entrez gene - 417071     See in Manteia.
RefSeq - XM_015278140
RefSeq - XM_015276256
RefSeq - XM_015276715
RefSeq - XM_015277248
RefSeq - XM_015277663
RefSeq - XM_015273039
RefSeq - XM_015273565
RefSeq - XM_015273973
RefSeq - XM_015274391
RefSeq - XM_015274836
RefSeq - XM_015275302
RefSeq - XM_015275791
swissprot - A0A1D5PSZ3
swissprot - A0A1D5PEM8
swissprot - A0A1D5P7E6
swissprot - A0A1D5NV84
Ensembl - ENSGALG00000043178
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sbf1ENSDARG00000062968Danio rerio
 SBF1ENSG00000100241Homo sapiens
 Sbf1ENSMUSG00000036529Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SBF2 / SET binding factor 2 / Q86WG5*ENSGALG0000000571659
MTMR3 / myotubularin related protein 3 / Q13615*ENSGALG0000000805111
MTMR4 / myotubularin related protein 4 / Q91XS1* / Q9NYA4* / Mus musculus myotubularin related protein 4 (Mtmr4), transcript variant 2, mRNA.*ENSGALG0000000104210
MTMR1 / myotubularin related protein 1 / Q13613* / Q9Z2C4*ENSGALG000000090859
MTMR2 / Q5ZIV1 / Myotubularin-related protein 2 / Q13614* / Q9Z2D1*ENSGALG000000172009
ENSGALG000000033138
MTMR6 / myotubularin related protein 6 / Q8VE11* / Q9Y217*ENSGALG000000171128
MTMR8 / myotubularin-related protein 8 / Q96EF0*ENSGALG000000075908
MTMR9 / myotubularin-related protein 9 / Q96QG7* / Q9Z2D0*ENSGALG000000166497
MTMR7* / Q9Y216* / Q9Z2C9* / myotubularin related protein 7*ENSGALG000000136415
MTM1 / myotubularin 1 / Q13496* / Q9Z2C5* / X-linked myotubular myopathy gene 1*ENSGALG000000090964
MTMR7* / Q9Y216* / Q9Z2C9* / myotubularin related protein 7*ENSGALG000000360213


Protein motifs (from Interpro)
Interpro ID Name
 IPR001194  cDENN domain
 IPR001849  Pleckstrin homology domain
 IPR004182  GRAM domain
 IPR005112  dDENN domain
 IPR005113  uDENN domain
 IPR010569  Myotubularin-like phosphatase domain
 IPR011993  PH-like domain superfamily
 IPR022096  SBF1/SBF2 domain
 IPR029021  Protein-tyrosine phosphatase-like
 IPR030564  Myotubularin family
 IPR030574  Myotubularin-related protein 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0043087 regulation of GTPase activity IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0019208 phosphatase regulator activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the ER membrane
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000017200 MTMR2 / Q5ZIV1 / Myotubularin-related protein 2 / Q13614* / Q9Z2D1*  / complex / reaction






 

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contact: otassy@igbmc.fr