ENSG00000100241


Homo sapiens

Features
Gene ID: ENSG00000100241
  
Biological name :SBF1
  
Synonyms : O95248 / SBF1 / SET binding factor 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q13.33
Gene start: 50445000
Gene end: 50475024
  
Corresponding Affymetrix probe sets: 212389_at (Human Genome U133 Plus 2.0 Array)   212393_at (Human Genome U133 Plus 2.0 Array)   213383_at (Human Genome U133 Plus 2.0 Array)   222084_s_at (Human Genome U133 Plus 2.0 Array)   39835_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000401538
Ensembl peptide - ENSP00000252027
Ensembl peptide - ENSP00000370196
NCBI entrez gene - 6305     See in Manteia.
OMIM - 603560
RefSeq - XM_017028905
RefSeq - NM_002972
RefSeq - XM_005261935
RefSeq - XM_011530709
RefSeq - XM_011530710
RefSeq Peptide - NP_002963
swissprot - O95248
swissprot - G5E933
swissprot - H0Y5W8
swissprot - A0A024R4Z9
Ensembl - ENSG00000100241
  
Related genetic diseases (OMIM): 615284 - Charcot-Marie-Tooth disease, type 4B3, 615284
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sbf1ENSDARG00000062968Danio rerio
 SBF1ENSGALG00000043178Gallus gallus
 Sbf1ENSMUSG00000036529Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SBF2 / Q86WG5 / SET binding factor 2ENSG0000013381259
MTMR4 / Q9NYA4 / myotubularin related protein 4ENSG0000010838911
MTMR3 / Q13615 / myotubularin related protein 3ENSG0000010033011
MTMR2 / Q13614 / myotubularin related protein 2ENSG0000008705311
MTMR1 / Q13613 / myotubularin related protein 1ENSG0000006360110
MTMR6 / Q9Y217 / myotubularin related protein 6ENSG000001395059
MTM1 / Q13496 / myotubularin 1ENSG000001711009
MTMR7 / Q9Y216 / myotubularin related protein 7ENSG000000039879
MTMR8 / Q96EF0 / myotubularin related protein 8ENSG000001020438
MTMR9 / Q96QG7 / myotubularin related protein 9ENSG000001046438


Protein motifs (from Interpro)
Interpro ID Name
 IPR001194  cDENN domain
 IPR001849  Pleckstrin homology domain
 IPR004182  GRAM domain
 IPR005112  dDENN domain
 IPR005113  uDENN domain
 IPR010569  Myotubularin-like phosphatase domain
 IPR011993  PH-like domain superfamily
 IPR022096  SBF1/SBF2 domain
 IPR029021  Protein-tyrosine phosphatase-like
 IPR030564  Myotubularin family
 IPR030574  Myotubularin-related protein 5
 IPR037516  Tripartite DENN domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation TAS
 biological_processGO:0006661 phosphatidylinositol biosynthetic process TAS
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0043087 regulation of GTPase activity IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016021 integral component of membrane TAS
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0008138 protein tyrosine/serine/threonine phosphatase activity TAS
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity TAS
 molecular_functionGO:0019208 phosphatase regulator activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the ER membrane
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001284 Areflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002936 Distal sensory impairment 
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 HP:0003383 Onion bulb formations on nerve biopsy 
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 HP:0003676 Progressive disorder 
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 HP:0012444 Brain atrophy "Partial or complete wasting (loss) of brain tissue that was once present." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000087053 MTMR2 / Q13614 / myotubularin related protein 2  / reaction / complex
 ENSG00000188419 CHM / P24386 / CHM, Rab escort protein 1  / reaction
 ENSG00000057608 GDI2 / P50395 / GDP dissociation inhibitor 2  / reaction
 ENSG00000203668 CHML / P26374 / CHM like, Rab escort protein 2  / reaction
 ENSG00000080371 RAB21 / Q9UL25 / RAB21, member RAS oncogene family  / reaction
 ENSG00000203879 GDI1 / P31150 / GDP dissociation inhibitor 1  / reaction






 

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