ENSG00000171100


Homo sapiens

Features
Gene ID: ENSG00000171100
  
Biological name :MTM1
  
Synonyms : MTM1 / myotubularin 1 / Q13496
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q28
Gene start: 150568619
Gene end: 150673322
  
Corresponding Affymetrix probe sets: 204101_at (Human Genome U133 Plus 2.0 Array)   36920_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359423
Ensembl peptide - ENSP00000400699
NCBI entrez gene - 4534     See in Manteia.
OMIM - 300415
RefSeq - XM_017029550
RefSeq - XM_011531173
RefSeq - XM_017029547
RefSeq - XM_017029548
RefSeq - XM_017029549
RefSeq - NM_000252
RefSeq - XM_005274687
RefSeq - XM_011531171
RefSeq - XM_011531172
RefSeq Peptide - NP_000243
swissprot - C9J2A2
swissprot - A0A024RC06
swissprot - Q13496
Ensembl - ENSG00000171100
  
Related genetic diseases (OMIM): 310400 - Myotubular myopathy, X-linked, 310400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mtm1ENSDARG00000037560Danio rerio
 MTM1ENSGALG00000009096Gallus gallus
 Mtm1ENSMUSG00000031337Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MTMR2 / Q13614 / myotubularin related protein 2ENSG0000008705365
MTMR1 / Q13613 / myotubularin related protein 1ENSG0000006360159
MTMR8 / Q96EF0 / myotubularin related protein 8ENSG0000010204335
MTMR3 / Q13615 / myotubularin related protein 3ENSG0000010033035
MTMR4 / Q9NYA4 / myotubularin related protein 4ENSG0000010838934
MTMR6 / Q9Y217 / myotubularin related protein 6ENSG0000013950534
MTMR7 / Q9Y216 / myotubularin related protein 7ENSG0000000398734
MTMR9 / Q96QG7 / myotubularin related protein 9ENSG0000010464329
SBF1 / O95248 / SET binding factor 1ENSG0000010024128
SBF2 / Q86WG5 / SET binding factor 2ENSG0000013381227


Protein motifs (from Interpro)
Interpro ID Name
 IPR000387  Tyrosine specific protein phosphatases domain
 IPR003595  Protein-tyrosine phosphatase, catalytic
 IPR004182  GRAM domain
 IPR010569  Myotubularin-like phosphatase domain
 IPR011993  PH-like domain superfamily
 IPR016130  Protein-tyrosine phosphatase, active site
 IPR029021  Protein-tyrosine phosphatase-like
 IPR030561  Myotubularin
 IPR030564  Myotubularin family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IDA
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006661 phosphatidylinositol biosynthetic process TAS
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0032007 negative regulation of TOR signaling IEA
 biological_processGO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IEA
 biological_processGO:0044088 regulation of vacuole organization IEA
 biological_processGO:0045109 intermediate filament organization IEA
 biological_processGO:0046716 muscle cell cellular homeostasis IEA
 biological_processGO:0046856 phosphatidylinositol dephosphorylation IEA
 biological_processGO:0048311 mitochondrion distribution IEA
 biological_processGO:0048633 positive regulation of skeletal muscle tissue growth IEA
 biological_processGO:0051898 negative regulation of protein kinase B signaling IEA
 biological_processGO:0070584 mitochondrion morphogenesis IDA
 biological_processGO:1902902 negative regulation of autophagosome assembly IEA
 cellular_componentGO:0001726 ruffle IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005623 cell IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030175 filopodium IEA
 cellular_componentGO:0031674 I band IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004438 phosphatidylinositol-3-phosphatase activity IEA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA
 molecular_functionGO:0019215 intermediate filament binding IDA
 molecular_functionGO:0035091 phosphatidylinositol binding IDA
 molecular_functionGO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the plasma membrane
Synthesis of PIPs at the early endosome membrane
Synthesis of PIPs at the late endosome membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000238 Hydrocephalus 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000275 Narrow face 
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 HP:0000276 Long face 
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 HP:0000298 Mask-like facies 
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 HP:0000467 Neck muscle weakness 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000544 External ophthalmoplegia 
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 HP:0001048 Cavernous hemangioma "The presence of a cavernous hemangioma. A hemangioma characterized by large endothelial spaces (caverns) is called a cavernous hemangioma." [HPO:curators]
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001410 Decreased liver function 
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001561 Polyhydramnios 
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 HP:0001678 Atrioventricular block 
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 HP:0002021 Pyloric stenosis 
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 HP:0002346 Head tremor 
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 HP:0002375 Hypokinesia 
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 HP:0002643 Neonatal respiratory distress 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003517 Birth length greater than 97th percentile 
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 HP:0004887 Respiratory failure requiring assisted ventilation 
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 HP:0006829 Severe muscular hypotonia "A severe degree of muscular hypotonia characterized by markedly reduced muscle tone." [HPO:curators]
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 HP:0009110 Diaphragmatic eventration "A congenital failure of muscular development of part or all of one or both hemidiaphragms, resulting in superior displacement of abdominal viscera and altered lung development." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011308 Slender toe "Digits are disproportionately narrow (reduced girth) for the hand/foot size or build of the individual." [pmid:19125433]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000150712 MTMR12 / Q9C0I1 / myotubularin related protein 12  / reaction / complex






 

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