ENSG00000133812


Homo sapiens

Features
Gene ID: ENSG00000133812
  
Biological name :SBF2
  
Synonyms : Q86WG5 / SBF2 / SET binding factor 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p15.4
Gene start: 9778667
Gene end: 10294207
  
Corresponding Affymetrix probe sets: 217202_s_at (Human Genome U133 Plus 2.0 Array)   226169_at (Human Genome U133 Plus 2.0 Array)   233914_s_at (Human Genome U133 Plus 2.0 Array)   242935_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000256190
Ensembl peptide - ENSP00000410478
Ensembl peptide - ENSP00000432643
Ensembl peptide - ENSP00000434620
NCBI entrez gene - 81846     See in Manteia.
OMIM - 607697
RefSeq - XM_017018377
RefSeq - XM_017018372
RefSeq - XM_017018373
RefSeq - XM_017018374
RefSeq - XM_017018375
RefSeq - XM_017018376
RefSeq - NM_030962
RefSeq - XM_005253154
RefSeq - XM_005253155
RefSeq - XM_011520394
RefSeq - XM_011520395
RefSeq - XM_011520396
RefSeq Peptide - NP_112224
swissprot - H0YD05
swissprot - H0YDZ1
swissprot - H0Y767
swissprot - Q86WG5
Ensembl - ENSG00000133812
  
Related genetic diseases (OMIM): 604563 - Charcot-Marie-Tooth disease, type 4B2, 604563
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sbf2ENSDARG00000059460Danio rerio
 SBF2ENSGALG00000005716Gallus gallus
 Sbf2ENSMUSG00000038371Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SBF1 / O95248 / SET binding factor 1ENSG0000010024160
MTMR3 / Q13615 / myotubularin related protein 3ENSG0000010033011
MTMR4 / Q9NYA4 / myotubularin related protein 4ENSG0000010838910
MTMR1 / Q13613 / myotubularin related protein 1ENSG0000006360110
MTMR2 / Q13614 / myotubularin related protein 2ENSG0000008705310
MTM1 / Q13496 / myotubularin 1ENSG000001711009
MTMR7 / Q9Y216 / myotubularin related protein 7ENSG000000039879
MTMR9 / Q96QG7 / myotubularin related protein 9ENSG000001046438
MTMR6 / Q9Y217 / myotubularin related protein 6ENSG000001395058
MTMR8 / Q96EF0 / myotubularin related protein 8ENSG000001020438


Protein motifs (from Interpro)
Interpro ID Name
 IPR001194  cDENN domain
 IPR001849  Pleckstrin homology domain
 IPR004182  GRAM domain
 IPR005112  dDENN domain
 IPR005113  uDENN domain
 IPR010569  Myotubularin-like phosphatase domain
 IPR011993  PH-like domain superfamily
 IPR022096  SBF1/SBF2 domain
 IPR029021  Protein-tyrosine phosphatase-like
 IPR030564  Myotubularin family
 IPR030567  Myotubularin-related protein 13
 IPR037516  Tripartite DENN domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042552 myelination NAS
 biological_processGO:0043087 regulation of GTPase activity IEA
 biological_processGO:0051262 protein tetramerization IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005774 vacuolar membrane IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity TAS
 molecular_functionGO:0019208 phosphatase regulator activity IEA
 molecular_functionGO:0019902 phosphatase binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the plasma membrane
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001178 Claw hand deformities (in severe cases) 
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 HP:0001265 Hyporeflexia 
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 HP:0001284 Areflexia 
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 HP:0001425 Heterogeneous 
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 HP:0001761 Pes cavus 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001765 Hammer toes 
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 HP:0002355 Difficulty walking 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002936 Distal sensory impairment 
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 HP:0003376 Steppage gait "An abnormal gait pattern that arises from weakness of the pretibial and peroneal muscles due to a lower motor neuron lesion. Affected patients have footdrop and are unable to dorsiflex and evert the foot. The leg is lifted high on walking so that the toes clear the ground, and there may be a slapping noise when the foot strikes the ground again." [HPO:curators]
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 HP:0003380 Decreased number of myelinated fibers "A loss of myelinated nerve fibers (in general, this finding can be observed on nerve biopsy)." [HPO:curators]
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 HP:0003383 Onion bulb formations on nerve biopsy 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003481 Segmental demyelination/remyelination 
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 HP:0003621 Juvenile onset 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0009027 Foot dorsiflexor weakness 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000188419 CHM / P24386 / CHM, Rab escort protein 1  / reaction
 ENSG00000133812 SBF2 / Q86WG5 / SET binding factor 2  / complex
 ENSG00000057608 GDI2 / P50395 / GDP dissociation inhibitor 2  / reaction
 ENSG00000203879 GDI1 / P31150 / GDP dissociation inhibitor 1  / reaction
 ENSG00000080371 RAB21 / Q9UL25 / RAB21, member RAS oncogene family  / reaction
 ENSG00000203668 CHML / P26374 / CHM like, Rab escort protein 2  / reaction
 ENSG00000087053 MTMR2 / Q13614 / myotubularin related protein 2  / reaction / complex






 

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