ENSMUSG00000000325


Mus musculus

Features
Gene ID: ENSMUSG00000000325
  
Biological name :Arvcf
  
Synonyms : Armadillo repeat protein deleted in velo-cardio-facial syndrome homolog / Arvcf / P98203
  
Possible biological names infered from orthology : ARVCF, delta catenin family member / O00192
  
Species: Mus musculus
  
Chr. number: 16
Strand: 1
Band: A3
Gene start: 18348182
Gene end: 18407076
  
Corresponding Affymetrix probe sets: 10434165 (MoGene1.0st)   1423061_at (Mouse Genome 430 2.0 Array)   1450855_at (Mouse Genome 430 2.0 Array)   1450856_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000118505
Ensembl peptide - ENSMUSP00000111276
Ensembl peptide - ENSMUSP00000111278
Ensembl peptide - ENSMUSP00000087562
Ensembl peptide - ENSMUSP00000111273
Ensembl peptide - ENSMUSP00000111275
NCBI entrez gene - 11877     See in Manteia.
MGI - MGI:109620
RefSeq - XM_017316854
RefSeq - NM_001272028
RefSeq - NM_001272029
RefSeq - NM_001272030
RefSeq - NM_001272031
RefSeq - NM_001272032
RefSeq - NM_033474
RefSeq - XM_011245807
RefSeq Peptide - NP_001258957
RefSeq Peptide - NP_001258959
RefSeq Peptide - NP_001258960
RefSeq Peptide - NP_001258961
RefSeq Peptide - NP_258435
RefSeq Peptide - NP_001258958
swissprot - D6RI19
swissprot - P98203
Ensembl - ENSMUSG00000000325
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arvcfaENSDARG00000074329Danio rerio
 arvcfbENSDARG00000061688Danio rerio
 ARVCFENSGALG00000043373Gallus gallus
 ARVCFENSG00000099889Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ctnnd1 / P30999 / Mus musculus catenin (cadherin associated protein), delta 1 (Ctnnd1), transcript variant 7, mRNA. / O60716* / catenin delta 1*ENSMUSG0000003410147
P30999 / Gm28635 / predicted gene 28635 / O60716* / CTNND1* / catenin delta 1*ENSMUSG0000010164547
Pkp4 / Q68FH0 / plakophilin 4 / Q99569*ENSMUSG0000002699136
Ctnnd2 / catenin delta-2 isoform 2 / Q9UQB3* / catenin delta 2*ENSMUSG0000002224036
Pkp2 / plakophilin 2 / Q99959*ENSMUSG0000004195721
Pkp3 / Q9QY23 / Plakophilin-3 / Q9Y446*ENSMUSG0000005406520
Pkp1 / P97350 / Plakophilin-1 / Q13835*ENSMUSG0000002641319


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR028435  Plakophilin/Delta catenin
 IPR028444  Armadillo repeat protein deleted in velo-cardio-facial syndrome


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules TAS
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005886 plasma membrane IDA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001303 abnormal lens morphology "malformed transparent structure of the eye responsible for focusing light rays" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:40203]
Show

Allelic Composition: Apptm1b(KOMP)Wtsi/Apptm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Apptm1b(KOMP)Wtsi/Ics

 MP:0001304 cataracts "complete or partial opacity of the lens" [J:65031]
Show

Allelic Composition: Acp2tm1a(EUCOMM)Wtsi/Acp2tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Acp2tm1a(EUCOMM)Wtsi/H

Allelic Composition: Arvcftm1e(EUCOMM)Wtsi/Arvcftm1e(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Arvcftm1e(EUCOMM)Wtsi/Ieg

 MP:0001399 hyperactivity "general restlessness or excessive movement; more frequent movement from one place to another" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409, J:57125]
Show

Allelic Composition: Acp2tm1a(EUCOMM)Wtsi/Acp2tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Acp2tm1a(EUCOMM)Wtsi/H

 MP:0001406 abnormal gait "unusual or distinctive way of walking" [J:65038]
Show

Allelic Composition: Acp2tm1a(EUCOMM)Wtsi/Acp2tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Acp2tm1a(EUCOMM)Wtsi/H

Allelic Composition: Arvcftm1e(EUCOMM)Wtsi/Arvcftm1e(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Arvcftm1e(EUCOMM)Wtsi/Ieg

 MP:0004924 abnormal behavior "anomalies in the actions, reactions, or performance of an organism in response to external or internal stimuli compared to controls" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Acp2tm1a(EUCOMM)Wtsi/Acp2tm1a(EUCOMM)Wtsi
Genetic Background: C57BL/6N-Acp2tm1a(EUCOMM)Wtsi/H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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