ENSMUSG00000002820


Mus musculus

Features
Gene ID: ENSMUSG00000002820
  
Biological name :Atg4d
  
Synonyms : Atg4d / Cysteine protease ATG4D Cysteine protease ATG4D, mitochondrial / Q8BGV9
  
Possible biological names infered from orthology : autophagy related 4D cysteine peptidase / Q86TL0
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: A3
Gene start: 21265293
Gene end: 21277772
  
Corresponding Affymetrix probe sets: 10583573 (MoGene1.0st)   1433918_at (Mouse Genome 430 2.0 Array)   1439130_at (Mouse Genome 430 2.0 Array)   1442872_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000068450
Ensembl peptide - ENSMUSP00000150253
NCBI entrez gene - 235040     See in Manteia.
MGI - MGI:2444308
RefSeq - XM_017313301
RefSeq - NM_153583
RefSeq - XM_006510185
RefSeq Peptide - NP_705811
swissprot - Q8BGV9
swissprot - A0A1L1STB3
Ensembl - ENSMUSG00000002820
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atg4daENSDARG00000043548Danio rerio
 atg4dbENSDARG00000088145Danio rerio
 ATG4DENSG00000130734Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Atg4c / Q811C2 / Cysteine protease ATG4C / Q96DT6* / autophagy related 4C cysteine peptidase*ENSMUSG0000002855044
Atg4b / autophagy related 4B cysteine peptidase / Q9Y4P1*ENSMUSG0000002628026
Atg4a-ps / autophagy related 4A, pseudogene / ATG4A* / Q8WYN0* / autophagy related 4A cysteine peptidase*ENSMUSG0000008711926
Atg4a / Q8C9S8 / Cysteine protease ATG4A / Q8WYN0* / autophagy related 4A cysteine peptidase*ENSMUSG0000007941826


Protein motifs (from Interpro)
Interpro ID Name
 IPR005078  Peptidase C54


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006501 C-terminal protein lipidation IBA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006612 protein targeting to membrane IBA
 biological_processGO:0006914 autophagy ISS
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0044804 autophagy of nucleus IBA
 biological_processGO:0051697 protein delipidation IBA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity IBA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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