ENSMUSG00000079418


Mus musculus

Features
Gene ID: ENSMUSG00000079418
  
Biological name :Atg4a
  
Synonyms : Atg4a / Cysteine protease ATG4A / Q8C9S8
  
Possible biological names infered from orthology : autophagy related 4A cysteine peptidase / Q8WYN0
  
Species: Mus musculus
  
Chr. number: X
Strand: 1
Band: F1
Gene start: 140956907
Gene end: 141164270
  
Corresponding Affymetrix probe sets: 10500802 (MoGene1.0st)   10602090 (MoGene1.0st)   1434662_at (Mouse Genome 430 2.0 Array)   1457650_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000108595
NCBI entrez gene - 666468     See in Manteia.
MGI - MGI:2147903
RefSeq - XM_017318603
RefSeq - NM_174875
RefSeq - XM_017318600
RefSeq - XM_017318601
RefSeq - XM_017318602
RefSeq - XM_017318599
RefSeq Peptide - NP_777364
swissprot - Q5EBK1
swissprot - Q8C9S8
Ensembl - ENSMUSG00000079418
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atg4aENSDARG00000014531Danio rerio
 ATG4AENSGALG00000008282Gallus gallus
 ATG4AENSG00000101844Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Atg4a-ps / autophagy related 4A, pseudogene / ATG4A* / Q8WYN0* / autophagy related 4A cysteine peptidase*ENSMUSG0000008711999
Atg4b / autophagy related 4B cysteine peptidase / Q9Y4P1*ENSMUSG0000002628054
Atg4d / Q8BGV9 / Cysteine protease ATG4D Cysteine protease ATG4D, mitochondrial / Q86TL0* / autophagy related 4D cysteine peptidase*ENSMUSG0000000282031
Atg4c / Q811C2 / Cysteine protease ATG4C / Q96DT6* / autophagy related 4C cysteine peptidase*ENSMUSG0000002855030


Protein motifs (from Interpro)
Interpro ID Name
 IPR005078  Peptidase C54
 IPR033474  Autophagin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006501 C-terminal protein lipidation IBA
 biological_processGO:0006508 proteolysis ISO
 biological_processGO:0006612 protein targeting to membrane IBA
 biological_processGO:0006914 autophagy ISS
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0044804 autophagy of nucleus IBA
 biological_processGO:0051697 protein delipidation IBA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity IBA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity ISO
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr