ENSMUSG00000005656


Mus musculus

Features
Gene ID: ENSMUSG00000005656
  
Biological name :Snx6
  
Synonyms : Q6P8X1 / Snx6 / Sorting nexin-6 Sorting nexin-6, N-terminally processed
  
Possible biological names infered from orthology : Q9UNH7 / sorting nexin 6
  
Species: Mus musculus
  
Chr. number: 12
Strand: -1
Band: C1
Gene start: 54746349
Gene end: 54795703
  
Corresponding Affymetrix probe sets: 10400336 (MoGene1.0st)   1425148_a_at (Mouse Genome 430 2.0 Array)   1429497_s_at (Mouse Genome 430 2.0 Array)   1447234_s_at (Mouse Genome 430 2.0 Array)   1451602_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000005798
Ensembl peptide - ENSMUSP00000151488
Ensembl peptide - ENSMUSP00000151460
NCBI entrez gene - 72183     See in Manteia.
MGI - MGI:1919433
RefSeq - NM_026998
RefSeq - XM_006516253
RefSeq Peptide - NP_081274
swissprot - A0A1W2P701
swissprot - Q6P8X1
swissprot - A0A1W2P6Y0
Ensembl - ENSMUSG00000005656
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snx6ENSDARG00000058444Danio rerio
 SNX6ENSGALG00000010025Gallus gallus
 SNX6ENSG00000129515Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Snx32 / Q80ZJ7 / Sorting nexin-32 / Q86XE0*ENSMUSG0000005618566
Snx5 / Q9D8U8 / Sorting nexin-5 / Q9Y5X3*ENSMUSG0000002742364
Snx2 / Q9CWK8 / sorting nexin 2 / O60749*ENSMUSG0000003448423
Snx1 / sorting nexin 1 / Q13596*ENSMUSG0000003238220


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR014637  Sorting nexin-5/6/32
 IPR015404  Sorting nexin Vps5-like, C-terminal
 IPR027267  AH/BAR domain superfamily
 IPR028657  Sorting nexin-6
 IPR036871  PX domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016050 vesicle organization IBA
 biological_processGO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway ISO
 biological_processGO:0042147 retrograde transport, endosome to Golgi ISS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISO
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0019898 extrinsic component of membrane IBA
 cellular_componentGO:0030904 retromer complex ISS
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031901 early endosome membrane ISS
 cellular_componentGO:0097422 tubular endosome ISO
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0034452 dynactin binding ISO
 molecular_functionGO:0034713 type I transforming growth factor beta receptor binding IPI
 molecular_functionGO:0035091 phosphatidylinositol binding IEA
 molecular_functionGO:0042803 protein homodimerization activity ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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