ENSDARG00000058444


Danio rerio

Features
Gene ID: ENSDARG00000058444
  
Biological name :snx6
  
Synonyms : snx6 / sorting nexin 6
  
Possible biological names infered from orthology : Q6P8X1 / Q9UNH7 / Sorting nexin-6 Sorting nexin-6, N-terminally processed
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 9963436
Gene end: 10000339
  
Corresponding Affymetrix probe sets: Dr.843.1.A1_at (Zebrafish Array)   NM_001030217_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123712
Ensembl peptide - ENSDARP00000133668
NCBI entrez gene - 567182     See in Manteia.
RefSeq - NM_001030217
RefSeq Peptide - NP_001025388
swissprot - F8W5C6
swissprot - A0A0R4III2
swissprot - Q4VA89
ZFIN ID - ZDB-GENE-050913-152
Ensembl - ENSDARG00000058444
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX6ENSGALG00000010025Gallus gallus
 SNX6ENSG00000129515Homo sapiens
 Snx6ENSMUSG00000005656Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx5 / sorting nexin 5 / Q9D8U8* / Q9Y5X3*ENSDARG0000002044261
snx1a / sorting nexin 1a / SNX1* / Q13596* / sorting nexin 1*ENSDARG0000007103120
snx2 / sorting nexin 2 / O60749* / Q9CWK8*ENSDARG0000010412818


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR014637  Sorting nexin-5/6/32
 IPR015404  Sorting nexin Vps5-like, C-terminal
 IPR027267  AH/BAR domain superfamily
 IPR028657  Sorting nexin-6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016050 vesicle organization IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0019898 extrinsic component of membrane IBA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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