ENSDARG00000020442


Danio rerio

Features
Gene ID: ENSDARG00000020442
  
Biological name :snx5
  
Synonyms : snx5 / sorting nexin 5
  
Possible biological names infered from orthology : Q9D8U8 / Q9Y5X3
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 33645413
Gene end: 33654931
  
Corresponding Affymetrix probe sets: Dr.6495.1.S1_at (Zebrafish Array)   NM_214769_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000018231
NCBI entrez gene - 406797     See in Manteia.
RefSeq - NM_214769
RefSeq Peptide - NP_999934
swissprot - Q6DI32
ZFIN ID - ZDB-GENE-040426-2857
Ensembl - ENSDARG00000020442
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX5ENSGALG00000008691Gallus gallus
 SNX5ENSG00000089006Homo sapiens
 Snx5ENSMUSG00000027423Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx6 / sorting nexin 6 / Q6P8X1* / Q9UNH7* / Sorting nexin-6 Sorting nexin-6, N-terminally processed*ENSDARG0000005844462
snx1a / sorting nexin 1a / SNX1* / Q13596* / sorting nexin 1*ENSDARG0000007103121
snx2 / sorting nexin 2 / O60749* / Q9CWK8*ENSDARG0000010412816


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR014637  Sorting nexin-5/6/32
 IPR015404  Sorting nexin Vps5-like, C-terminal
 IPR027267  AH/BAR domain superfamily
 IPR028654  Sorting nexin-5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0006907 pinocytosis IEA
 biological_processGO:0007219 Notch signaling pathway IMP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016050 vesicle organization IBA
 biological_processGO:0030097 hemopoiesis IMP
 biological_processGO:0042063 gliogenesis IMP
 biological_processGO:0048514 blood vessel morphogenesis IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0019898 extrinsic component of membrane IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0035091 phosphatidylinositol binding IBA


Pathways (from Reactome)
Pathway description
Golgi Associated Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000155 somite somite cuboid , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel branchiness , abnormal
intersegmental vessel decreased amount , abnormal
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 ZFA:0005024 trunk vasculature trunk vasculature blood vessel morphogenesis process quality , abnormal
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 ZFA:0009044 blood cell blood cell decreased amount , abnormal
Show

 ZFA:0009262 retinal cone cell retinal cone cell increased amount , abnormal
Show

 ZFA:0009280 Muller cell Muller cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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