ENSDARG00000071031


Danio rerio

Features
Gene ID: ENSDARG00000071031
  
Biological name :snx1a
  
Synonyms : snx1a / sorting nexin 1a
  
Possible biological names infered from orthology : Q13596 / SNX1 / sorting nexin 1
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 6016642
Gene end: 6049339
  
Corresponding Affymetrix probe sets: Dr.5450.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000069669
NCBI entrez gene - 337386     See in Manteia.
RefSeq - NM_001128671
RefSeq Peptide - NP_001122143
swissprot - F1Q9I7
ZFIN ID - ZDB-GENE-060302-3
Ensembl - ENSDARG00000071031
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX1ENSGALG00000002189Gallus gallus
 SNX1ENSG00000028528Homo sapiens
 Snx1ENSMUSG00000032382Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx2 / sorting nexin 2 / O60749* / Q9CWK8*ENSDARG0000010412835
snx5 / sorting nexin 5 / Q9D8U8* / Q9Y5X3*ENSDARG0000002044212
snx6 / sorting nexin 6 / Q6P8X1* / Q9UNH7* / Sorting nexin-6 Sorting nexin-6, N-terminally processed*ENSDARG0000005844412


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR005329  Sorting nexin, N-terminal
 IPR015404  Sorting nexin Vps5-like, C-terminal
 IPR027267  AH/BAR domain superfamily
 IPR028660  Sorting nexin-1
 IPR034901  Sorting Nexin 1, PX domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0016050 vesicle organization IBA
 biological_processGO:0034498 early endosome to Golgi transport IBA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IBA
 cellular_componentGO:0019898 extrinsic component of membrane IBA
 cellular_componentGO:0030904 retromer complex IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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