ENSMUSG00000025049


Mus musculus

Features
Gene ID: ENSMUSG00000025049
  
Biological name :Taf5
  
Synonyms : Taf5 / TATA-box binding protein associated factor 5
  
Possible biological names infered from orthology : Q15542
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: C3
Gene start: 47067748
Gene end: 47083479
  
Corresponding Affymetrix probe sets: 10463739 (MoGene1.0st)   1435474_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000026027
NCBI entrez gene - 226182     See in Manteia.
MGI - MGI:2442144
RefSeq - NM_177342
RefSeq Peptide - NP_796316
swissprot - F8VPY2
Ensembl - ENSMUSG00000025049
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf5ENSDARG00000018325Danio rerio
 TAF5ENSGALG00000008241Gallus gallus
 TAF5ENSG00000148835Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Taf5l / Q91WQ5 / Mus musculus TATA-box binding protein associated factor 5 like (Taf5l), transcript variant 2, mRNA. / O75529* / TATA-box binding protein associated factor 5 like*ENSMUSG0000003869729
Q6KAU8 / Atg16l2 / autophagy related 16-like 2 (S. cerevisiae) / Q8NAA4* / autophagy related 16 like 2*ENSMUSG0000004776713
Q8C0J2 / Atg16l1 / autophagy related 16-like 1 (S. cerevisiae) / Q676U5* / autophagy related 16 like 1*ENSMUSG0000002628911
Wdr83 / Q9DAJ4 / WD repeat domain containing 83 / Q9BRX9* / WD repeat domain 83*ENSMUSG000000051508


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006594  LIS1 homology motif
 IPR007582  TFIID subunit TAF5, NTD2 domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR036322  WD40-repeat-containing domain superfamily
 IPR037264  TFIID subunit TAF5, NTD2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter IEA
 biological_processGO:0016573 histone acetylation IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0033276 transcription factor TFTC complex IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0004402 histone acetyltransferase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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