ENSMUSG00000047767


Mus musculus

Features
Gene ID: ENSMUSG00000047767
  
Biological name :Atg16l2
  
Synonyms : Atg16l2 / autophagy related 16-like 2 (S. cerevisiae) / Q6KAU8
  
Possible biological names infered from orthology : autophagy related 16 like 2 / Q8NAA4
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: E2
Gene start: 101263034
Gene end: 101302251
  
Corresponding Affymetrix probe sets: 10565968 (MoGene1.0st)   1429396_at (Mouse Genome 430 2.0 Array)   1442207_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000116414
Ensembl peptide - ENSMUSP00000117029
Ensembl peptide - ENSMUSP00000146933
Ensembl peptide - ENSMUSP00000146572
Ensembl peptide - ENSMUSP00000117387
Ensembl peptide - ENSMUSP00000112500
Ensembl peptide - ENSMUSP00000113320
NCBI entrez gene - 73683     See in Manteia.
MGI - MGI:1920933
RefSeq - XM_011241918
RefSeq - XM_006508226
RefSeq - XM_006508227
RefSeq - XM_006508228
RefSeq - XM_006508230
RefSeq - XM_006508231
RefSeq - XM_011241916
RefSeq - XM_011241917
RefSeq - NM_001111111
RefSeq - XM_006508225
RefSeq Peptide - NP_001104581
swissprot - A0A140LIS0
swissprot - G9M4M8
swissprot - D3Z653
swissprot - D6RHC1
swissprot - Q6KAU8
swissprot - A0A140LHW3
Ensembl - ENSMUSG00000047767
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atg16l2ENSDARG00000043238Danio rerio
 atg16l2ENSDARG00000109384Danio rerio
 Q8NAA4ENSG00000168010Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8C0J2 / Atg16l1 / autophagy related 16-like 1 (S. cerevisiae) / Q676U5* / autophagy related 16 like 1*ENSMUSG0000002628936
Taf5l / Q91WQ5 / Mus musculus TATA-box binding protein associated factor 5 like (Taf5l), transcript variant 2, mRNA. / O75529* / TATA-box binding protein associated factor 5 like*ENSMUSG0000003869716
Taf5 / TATA-box binding protein associated factor 5 / Q15542*ENSMUSG0000002504916
Wdr83 / Q9DAJ4 / WD repeat domain containing 83 / Q9BRX9* / WD repeat domain 83*ENSMUSG0000000515011


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR013923  Autophagy-related protein 16
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0039689 negative stranded viral RNA replication IMP
 cellular_componentGO:0000421 autophagosome membrane IBA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0005016 decreased lymphocyte number "fewer than normal white blood cell numbers " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Rag1m1Anu/Rag1m1Anu
Genetic Background: C57BL/6NCrlAnu-Rag1m1Anu

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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