ENSMUSG00000038697


Mus musculus

Features
Gene ID: ENSMUSG00000038697
  
Biological name :Taf5l
  
Synonyms : Mus musculus TATA-box binding protein associated factor 5 like (Taf5l), transcript variant 2, mRNA. / Q91WQ5 / Taf5l
  
Possible biological names infered from orthology : O75529 / TATA-box binding protein associated factor 5 like
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: E2
Gene start: 123996318
Gene end: 124021397
  
Corresponding Affymetrix probe sets: 10582642 (MoGene1.0st)   1448195_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000090726
Ensembl peptide - ENSMUSP00000128710
Ensembl peptide - ENSMUSP00000148808
NCBI entrez gene - 102162     See in Manteia.
MGI - MGI:1919039
RefSeq - XM_006530546
RefSeq - NM_001357315
RefSeq - NM_133966
RefSeq Peptide - NP_001344244
RefSeq Peptide - NP_598727
swissprot - Q91WQ5
swissprot - A0A1D5RMJ9
Ensembl - ENSMUSG00000038697
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf5lENSDARG00000025808Danio rerio
 TAF5LENSGALG00000011098Gallus gallus
 TAF5LENSG00000135801Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Taf5 / TATA-box binding protein associated factor 5 / Q15542*ENSMUSG0000002504940
Q6KAU8 / Atg16l2 / autophagy related 16-like 2 (S. cerevisiae) / Q8NAA4* / autophagy related 16 like 2*ENSMUSG0000004776717
Q8C0J2 / Atg16l1 / autophagy related 16-like 1 (S. cerevisiae) / Q676U5* / autophagy related 16 like 1*ENSMUSG0000002628916
Wdr83 / Q9DAJ4 / WD repeat domain containing 83 / Q9BRX9* / WD repeat domain 83*ENSMUSG0000000515010


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR007582  TFIID subunit TAF5, NTD2 domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR036322  WD40-repeat-containing domain superfamily
 IPR037264  TFIID subunit TAF5, NTD2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043966 histone H3 acetylation IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0030914 STAGA complex IEA
 cellular_componentGO:0033276 transcription factor TFTC complex IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0004402 histone acetyltransferase activity IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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