ENSMUSG00000031410


Mus musculus

Features
Gene ID: ENSMUSG00000031410
  
Biological name :Nxf7
  
Synonyms : Nxf7
  
Possible biological names infered from orthology : nuclear RNA export factor 2 / nuclear RNA export factor 2B / nuclear RNA export factor 5 / NXF2 / NXF2B / NXF5 / Q9GZY0 / Q9H1B4
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: F1
Gene start: 135579555
Gene end: 135598777
  
Corresponding Affymetrix probe sets: 10606792 (MoGene1.0st)   1427399_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000033784
Ensembl peptide - ENSMUSP00000117622
Ensembl peptide - ENSMUSP00000119764
Ensembl peptide - ENSMUSP00000122993
Ensembl peptide - ENSMUSP00000108788
NCBI entrez gene - 170722     See in Manteia.
MGI - MGI:2159343
RefSeq - XM_006528512
RefSeq - NM_130888
RefSeq - XM_006528509
RefSeq - XM_006528510
RefSeq - XM_006528511
RefSeq Peptide - NP_570958
swissprot - Q80SZ6
swissprot - F7AR15
swissprot - A2AEI5
swissprot - A2AEI4
Ensembl - ENSMUSG00000031410
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nxf1ENSDARG00000055076Danio rerio
 zgc:153681ENSDARG00000086017Danio rerio
 NXF2ENSG00000269405Homo sapiens
 NXF2BENSG00000269437Homo sapiens
 NXF5ENSG00000126952Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Nxf2 / NXF5* / NXF2B* / Q9GZY0* / Q9H1B4* / nuclear RNA export factor 2* / nuclear RNA export factor 5* / nuclear RNA export factor 2B*ENSMUSG0000000994147
Nxf1 / Q99JX7 / Q9CQE2 / Nuclear RNA export factor 1 / Q9UBU9*ENSMUSG0000001009746
Nxf3 / Q9H4D5* / nuclear RNA export factor 3*ENSMUSG0000005700033


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR002075  Nuclear transport factor 2
 IPR005637  TAP C-terminal (TAP-C) domain
 IPR009060  UBA-like superfamily
 IPR015245  Nuclear RNA export factor Tap, RNA-binding domain
 IPR018222  Nuclear transport factor 2, eukaryote
 IPR030217  Nuclear RNA export factor
 IPR030218  Nuclear RNA export factor 5
 IPR032675  Leucine-rich repeat domain superfamily
 IPR032710  NTF2-like domain superfamily
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006406 mRNA export from nucleus IEA
 biological_processGO:0016973 poly(A)+ mRNA export from nucleus IBA
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding ISA
 molecular_functionGO:0003729 mRNA binding IDA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0012307 impaired spatial learning "impaired ability to ascertain or acquire spatial location information in order to improve navigation or other behavior using such location cues" [MGI:csmith]
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Allelic Composition: Krt90whnl/Krt90whnl
Genetic Background: B6.MRL-Krt90whnl/GrsrJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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