ENSMUSG00000038515


Mus musculus

Features
Gene ID: ENSMUSG00000038515
  
Biological name :Grtp1
  
Synonyms : Growth hormone-regulated TBC protein 1 / Grtp1 / Q9D3N8
  
Possible biological names infered from orthology : Q5TC63
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: A1.1
Gene start: 13172022
Gene end: 13200620
  
Corresponding Affymetrix probe sets: 10577114 (MoGene1.0st)   1425891_a_at (Mouse Genome 430 2.0 Array)   1439150_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000147466
Ensembl peptide - ENSMUSP00000148073
Ensembl peptide - ENSMUSP00000148042
Ensembl peptide - ENSMUSP00000147856
Ensembl peptide - ENSMUSP00000130324
Ensembl peptide - ENSMUSP00000147337
NCBI entrez gene - 66790     See in Manteia.
MGI - MGI:1914040
RefSeq - XM_006508850
RefSeq - XM_017312937
RefSeq - XM_006508851
RefSeq - NM_025768
RefSeq Peptide - NP_080044
swissprot - Q9D3N8
swissprot - A0A1B0GSU4
swissprot - A0A1B0GRC7
swissprot - A0A1B0GSA2
Ensembl - ENSMUSG00000038515
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 grtp1aENSDARG00000029936Danio rerio
 grtp1bENSDARG00000030269Danio rerio
 GRTP1ENSGALG00000016828Gallus gallus
 GRTP1ENSG00000139835Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8C9V1 / Carabin / Tbc1d10c / Q8IV04* / TBC1 domain family member 10C*ENSMUSG0000004024730
Q8BHL3 / Tbc1d10b / TBC1 domain family member 10B / Q4KMP7*ENSMUSG0000004249227
P58802 / Tbc1d10a / TBC1 domain family member 10A / Q9BXI6* / AC004997.1*ENSMUSG0000003441227
Q80XC3 / Usp6nl / USP6 N-terminal like / Q92738*ENSMUSG0000003904625


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR035969  Rab-GTPase-TBC domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001157 small seminal gland "reduced size, compared to the norm, of one of the two folded, sac shaped, glands that is a diverticulum of the ductus deferens " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Golga3tm1b(EUCOMM)Hmgu/Golga3tm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Golga3tm1b(EUCOMM)Hmgu/H

 MP:0001297 microphthalmia "reduced average size of the eyes" [J:18048]
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Allelic Composition: Golga3tm1b(EUCOMM)Hmgu/Golga3tm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Golga3tm1b(EUCOMM)Hmgu/H

 MP:0001402 hypoactivity "reduced movement from one place to another" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, J:64289]
Show

Allelic Composition: Golga3tm1b(EUCOMM)Hmgu/Golga3tm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Golga3tm1b(EUCOMM)Hmgu/H

 MP:0003896 prolonged PQ interval "increase in the length of time between the beginning of atrial depolarisation and the beginning of ventricular depolarisation" [monikat:Monika Tomczuk, Mouse Genome Informatics Curator]
Show

Allelic Composition: Golga3tm1b(EUCOMM)Hmgu/Golga3tm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Golga3tm1b(EUCOMM)Hmgu/H

 MP:0005385 cardiovascular system phenotype 
Show

Allelic Composition: Golga3tm1b(EUCOMM)Hmgu/Golga3tm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Golga3tm1b(EUCOMM)Hmgu/H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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