ENSMUSG00000039046


Mus musculus

Features
Gene ID: ENSMUSG00000039046
  
Biological name :Usp6nl
  
Synonyms : Q80XC3 / Usp6nl / USP6 N-terminal like
  
Possible biological names infered from orthology : Q92738
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: A1
Gene start: 6322667
Gene end: 6446390
  
Corresponding Affymetrix probe sets: 10469110 (MoGene1.0st)   1440883_at (Mouse Genome 430 2.0 Array)   1445161_at (Mouse Genome 430 2.0 Array)   1455580_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000043178
Ensembl peptide - ENSMUSP00000110587
NCBI entrez gene - 98910     See in Manteia.
MGI - MGI:2138893
RefSeq - XM_011238993
RefSeq - NM_001080548
RefSeq - NM_181399
RefSeq - XM_006497569
RefSeq - XM_006497570
RefSeq - XM_011238992
RefSeq - XM_006497568
RefSeq Peptide - NP_852064
RefSeq Peptide - NP_001074017
swissprot - Q80XC3
Ensembl - ENSMUSG00000039046
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp6nlENSDARG00000022187Danio rerio
 USP6NLENSGALG00000035563Gallus gallus
 Q92738ENSG00000148429Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BHL3 / Tbc1d10b / TBC1 domain family member 10B / Q4KMP7*ENSMUSG0000004249217
P58802 / Tbc1d10a / TBC1 domain family member 10A / Q9BXI6* / AC004997.1*ENSMUSG0000003441215
Q8C9V1 / Carabin / Tbc1d10c / Q8IV04* / TBC1 domain family member 10C*ENSMUSG0000004024713
Grtp1 / Q9D3N8 / Growth hormone-regulated TBC protein 1 / Q5TC63*ENSMUSG0000003851510


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR035969  Rab-GTPase-TBC domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0007030 Golgi organization IEA
 biological_processGO:0019068 virion assembly IEA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0035526 retrograde transport, plasma membrane to Golgi IEA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0048227 plasma membrane to endosome transport IEA
 biological_processGO:0090630 activation of GTPase activity IBA
 biological_processGO:1903358 regulation of Golgi organization IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0012505 endomembrane system IBA
 cellular_componentGO:0031410 cytoplasmic vesicle IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000030055 Rab43 / Q8CG50 / RAB43, member RAS oncogene family / Q86YS6*  / complex / reaction






 

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