ENSDARG00000022187


Danio rerio

Features
Gene ID: ENSDARG00000022187
  
Biological name :usp6nl
  
Synonyms : usp6nl / USP6 N-terminal like
  
Possible biological names infered from orthology : Q80XC3 / Q92738
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 23771034
Gene end: 23873924
  
Corresponding Affymetrix probe sets: Dr.11936.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000107300
Ensembl peptide - ENSDARP00000113866
Ensembl peptide - ENSDARP00000091164
NCBI entrez gene - 561983     See in Manteia.
RefSeq - NM_001130599
RefSeq Peptide - NP_001124071
swissprot - F1R5Z9
swissprot - F1QF05
swissprot - Q5VSE2
ZFIN ID - ZDB-GENE-041210-192
Ensembl - ENSDARG00000022187
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP6NLENSGALG00000035563Gallus gallus
 Q92738ENSG00000148429Homo sapiens
 Q80XC3ENSMUSG00000039046Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkeyp-19e1.3 / B9A6J9* / TBC1D3* / P0C7X1* / Q2M2D7* / Q6DHY5* / Q6IPX1* / Q8IZP1* / Q86UD7* / A6NDS4* / TBC1D3H* / TBC1D3G* / TBC1D3I* / TBC1D3K* / TBC1D3L* / TBC1D26* / TBC1D28* / TBC1...ENSDARG0000005183633
si:ch211-288d18.1 / B9A6J9* / TBC1D3* / P0C7X1* / Q2M2D7* / Q6DHY5* / Q6IPX1* / Q8IZP1* / Q86UD7* / A6NDS4* / TBC1D3H* / TBC1D3G* / TBC1D3I* / TBC1D3K* / TBC1D3L* / TBC1D26* / TBC1D28* / TB...ENSDARG0000001108830
si:ch211-266k8.4ENSDARG0000008684015
tbc1d10c / TBC1 domain family, member 10C / Q8C9V1* / Q8IV04* / Carabin *ENSDARG0000003740814
tbc1d10b / TBC1 domain family, member 10b / Q4KMP7* / Q8BHL3*ENSDARG0000007860414
tbc1d10ab / TBC1 domain family, member 10Ab / P58802* / Q9BXI6* / TBC1D10A* / AC004997.1* / TBC1 domain family member 10A*ENSDARG0000006009612
tbc1d10aa / TBC1 domain family, member 10Aa / P58802* / Q9BXI6* / TBC1D10A* / AC004997.1* / TBC1 domain family member 10A*ENSDARG0000010207012
grtp1b / growth hormone regulated TBC protein 1b / GRTP1* / Q5TC63* / Q9D3N8* / growth hormone regulated TBC protein 1*ENSDARG000000302699
grtp1a / growth hormone regulated TBC protein 1a / GRTP1* / Q5TC63* / growth hormone regulated TBC protein 1*ENSDARG000000299369


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000059404 rab43 / RAB43, member RAS oncogene family / Q86YS6* / Q8CG50*  / complex / reaction






 

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