ENSDARG00000059404


Danio rerio

Features
Gene ID: ENSDARG00000059404
  
Biological name :rab43
  
Synonyms : rab43 / RAB43, member RAS oncogene family
  
Possible biological names infered from orthology : Q86YS6 / Q8CG50
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 440305
Gene end: 450099
  
Corresponding Affymetrix probe sets: Dr.21257.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000076952
NCBI entrez gene - 751627     See in Manteia.
RefSeq - XM_005155679
RefSeq - XM_005155678
RefSeq Peptide - NP_001038812
swissprot - Q0P3V5
ZFIN ID - ZDB-GENE-060825-25
Ensembl - ENSDARG00000059404
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB43ENSGALG00000005021Gallus gallus
 RAB43ENSG00000172780Homo sapiens
 Rab43ENSMUSG00000030055Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAB19 (1 of many) / RAB19, member RAS oncogene family / RAB19* / A4D1S5* / P35294* / Ras-related protein Rab-19 *ENSDARG0000010115048
rab30 / RAB30, member RAS oncogene family / Q15771* / Q923S9*ENSDARG0000003788446
zgc:171927 / RAB1B* / Q9D1G1* / Q9H0U4* / RAB1B, member RAS oncogene family*ENSDARG0000003305644
rab1aa / RAB1A, member RAS oncogene family aENSDARG0000005226343
rab1ba / zRAB1B, member RAS oncogene family aENSDARG0000005804442
rab1ab / RAB1A, member RAS oncogene family b / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A * / RAB1A, member RAS oncogene family*ENSDARG0000002966342
rab1bb / RAB1B, member RAS oncogene family bENSDARG0000005647942
rab35b / RAB35, member RAS oncogene family b / RAB35* / Q6PHN9* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000005842539
si:dkey-16l2.16ENSDARG0000003796738
zgc:101559ENSDARG0000000325738
rab33ba / RAB33B, member RAS oncogene family a / RAB33B* / O35963* / Q9H082* / RAB33B, member RAS oncogene family*ENSDARG0000005229038
rab33a / RAB33A, member RAS oncogene family / P97950* / Q14088*ENSDARG0000005739437
CABZ01072548.1 / RAB35* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000010207836
CABZ01072885.1 / RAB26* / Q9ULW5* / RAB26, member RAS oncogene family*ENSDARG0000010425933
rab40b / RAB40B, member RAS oncogene family / Q12829* / RAB40A* / Q8WXH6* / P0C0E4* / RAB40AL* / RAB40A like* / RAB40A, member RAS oncogene family*ENSDARG0000004241032
rab40c / RAB40c, member RAS oncogene family / Q8VHQ4* / Q96S21*ENSDARG0000006120830


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005794 Golgi apparatus IBA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000022187 usp6nl / USP6 N-terminal like / Q80XC3* / Q92738*  / complex / reaction






 

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