ENSDARG00000061208


Danio rerio

Features
Gene ID: ENSDARG00000061208
  
Biological name :rab40c
  
Synonyms : rab40c / RAB40c, member RAS oncogene family
  
Possible biological names infered from orthology : Q8VHQ4 / Q96S21
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 26751861
Gene end: 26787430
  
Corresponding Affymetrix probe sets: Dr.23187.1.S1_at (Zebrafish Array)   Dr.4231.1.A1_at (Zebrafish Array)   NM_001040348_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000081481
NCBI entrez gene - 678600     See in Manteia.
RefSeq - NM_001040348
RefSeq Peptide - NP_001035438
swissprot - Q1RLP4
ZFIN ID - ZDB-GENE-030515-1
Ensembl - ENSDARG00000061208
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB40CENSGALG00000030481Gallus gallus
 Q96S21ENSG00000197562Homo sapiens
 Q8VHQ4ENSMUSG00000025730Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab40b / RAB40B, member RAS oncogene family / Q12829* / RAB40A* / Q8WXH6* / P0C0E4* / RAB40AL* / RAB40A like* / RAB40A, member RAS oncogene family*ENSDARG0000004241079
rab1ab / RAB1A, member RAS oncogene family b / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A * / RAB1A, member RAS oncogene family*ENSDARG0000002966329
rab1bb / RAB1B, member RAS oncogene family bENSDARG0000005647928
rab1ba / zRAB1B, member RAS oncogene family aENSDARG0000005804428
rab1aa / RAB1A, member RAS oncogene family aENSDARG0000005226328
zgc:171927 / RAB1B* / Q9D1G1* / Q9H0U4* / RAB1B, member RAS oncogene family*ENSDARG0000003305627
si:dkey-16l2.16ENSDARG0000003796725
rab35b / RAB35, member RAS oncogene family b / RAB35* / Q6PHN9* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000005842525
rab30 / RAB30, member RAS oncogene family / Q15771* / Q923S9*ENSDARG0000003788424
CABZ01072548.1 / RAB35* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000010207824
zgc:101559ENSDARG0000000325723
rab33ba / RAB33B, member RAS oncogene family a / RAB33B* / O35963* / Q9H082* / RAB33B, member RAS oncogene family*ENSDARG0000005229023
rab43 / RAB43, member RAS oncogene family / Q86YS6* / Q8CG50*ENSDARG0000005940423
RAB19 (1 of many) / RAB19, member RAS oncogene family / RAB19* / A4D1S5* / P35294* / Ras-related protein Rab-19 *ENSDARG0000010115023
rab33a / RAB33A, member RAS oncogene family / P97950* / Q14088*ENSDARG0000005739423
CABZ01072885.1 / RAB26* / Q9ULW5* / RAB26, member RAS oncogene family*ENSDARG0000010425919


Protein motifs (from Interpro)
Interpro ID Name
 IPR001496  SOCS box domain
 IPR001806  Small GTPase superfamily
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0072659 protein localization to plasma membrane IBA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IBA
 cellular_componentGO:0030667 secretory granule membrane IBA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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