ENSG00000197562


Homo sapiens

Features
Gene ID: ENSG00000197562
  
Biological name :RAB40C
  
Synonyms : Q96S21 / RAB40C / RAB40C, member RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: p13.3
Gene start: 589357
Gene end: 629272
  
Corresponding Affymetrix probe sets: 1569396_at (Human Genome U133 Plus 2.0 Array)   213466_at (Human Genome U133 Plus 2.0 Array)   227269_s_at (Human Genome U133 Plus 2.0 Array)   227698_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457845
Ensembl peptide - ENSP00000438382
Ensembl peptide - ENSP00000455029
Ensembl peptide - ENSP00000454383
Ensembl peptide - ENSP00000454347
Ensembl peptide - ENSP00000445050
Ensembl peptide - ENSP00000438492
Ensembl peptide - ENSP00000248139
Ensembl peptide - ENSP00000455225
Ensembl peptide - ENSP00000455232
Ensembl peptide - ENSP00000457116
NCBI entrez gene - 57799     See in Manteia.
RefSeq - NM_001172665
RefSeq - NM_021168
RefSeq - NM_001172663
RefSeq - NM_001172664
RefSeq - NM_001172666
RefSeq Peptide - NP_001166135
RefSeq Peptide - NP_001166134
RefSeq Peptide - NP_066991
RefSeq Peptide - NP_001166137
RefSeq Peptide - NP_001166136
swissprot - Q96S21
swissprot - H3BME4
swissprot - H3BMH4
swissprot - H3BNV8
swissprot - H3BPA5
swissprot - H3BPB1
swissprot - H3BTC6
swissprot - H3BUX0
Ensembl - ENSG00000197562
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab40cENSDARG00000061208Danio rerio
 RAB40CENSGALG00000030481Gallus gallus
 Q8VHQ4ENSMUSG00000025730Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q12829 / RAB40B / RAB40B, member RAS oncogene familyENSG0000014154279
Q8WXH6 / RAB40A / RAB40A, member RAS oncogene familyENSG0000017247674
P0C0E4 / RAB40AL / RAB40A likeENSG0000010212874
RAB1B / Q9H0U4 / RAB1B, member RAS oncogene familyENSG0000017490328
RAB1A / P62820 / RAB1A, member RAS oncogene familyENSG0000013806928
RAB19 / A4D1S5 / RAB19, member RAS oncogene familyENSG0000014695526
RAB43 / Q86YS6 / RAB43, member RAS oncogene familyENSG0000017278025
RAB26 / Q9ULW5 / RAB26, member RAS oncogene familyENSG0000016796425
RAB35 / Q15286 / RAB35, member RAS oncogene familyENSG0000011173724
RAB30 / Q15771 / RAB30, member RAS oncogene familyENSG0000013750223
RAB37 / Q96AX2 / RAB37, member RAS oncogene familyENSG0000017279423
Q9H082 / RAB33B / RAB33B, member RAS oncogene familyENSG0000017200723
Q14088 / RAB33A / RAB33A, member RAS oncogene familyENSG0000013459422


Protein motifs (from Interpro)
Interpro ID Name
 IPR001496  SOCS box domain
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036036  SOCS box-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0072659 protein localization to plasma membrane IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030667 secretory granule membrane IBA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0019003 GDP binding IEA


Pathways (from Reactome)
Pathway description
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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