ENSG00000172780


Homo sapiens

Features
Gene ID: ENSG00000172780
  
Biological name :RAB43
  
Synonyms : Q86YS6 / RAB43 / RAB43, member RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q21.3
Gene start: 129087569
Gene end: 129122801
  
Corresponding Affymetrix probe sets: 225632_s_at (Human Genome U133 Plus 2.0 Array)   229894_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000427632
Ensembl peptide - ENSP00000481399
Ensembl peptide - ENSP00000319781
Ensembl peptide - ENSP00000376981
Ensembl peptide - ENSP00000376982
Ensembl peptide - ENSP00000376984
Ensembl peptide - ENSP00000376985
Ensembl peptide - ENSP00000390782
NCBI entrez gene - 339122     See in Manteia.
RefSeq - NM_001204885
RefSeq - NM_001204883
RefSeq - NM_001204884
RefSeq - NM_001204886
RefSeq - NM_001204887
RefSeq - NM_001204888
RefSeq - NM_198490
RefSeq Peptide - NP_940892
RefSeq Peptide - NP_001191812
RefSeq Peptide - NP_001191813
RefSeq Peptide - NP_001191814
RefSeq Peptide - NP_001191815
RefSeq Peptide - NP_001191816
RefSeq Peptide - NP_001191817
swissprot - C9JFM7
swissprot - Q86YS6
Ensembl - ENSG00000172780
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab43ENSDARG00000059404Danio rerio
 RAB43ENSGALG00000005021Gallus gallus
 Rab43ENSMUSG00000030055Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAB19 / A4D1S5 / RAB19, member RAS oncogene familyENSG0000014695553
RAB30 / Q15771 / RAB30, member RAS oncogene familyENSG0000013750250
RAB1B / Q9H0U4 / RAB1B, member RAS oncogene familyENSG0000017490343
RAB1A / P62820 / RAB1A, member RAS oncogene familyENSG0000013806943
RAB26 / Q9ULW5 / RAB26, member RAS oncogene familyENSG0000016796441
RAB35 / Q15286 / RAB35, member RAS oncogene familyENSG0000011173738
RAB37 / Q96AX2 / RAB37, member RAS oncogene familyENSG0000017279438
Q9H082 / RAB33B / RAB33B, member RAS oncogene familyENSG0000017200737
Q14088 / RAB33A / RAB33A, member RAS oncogene familyENSG0000013459436
Q8WXH6 / RAB40A / RAB40A, member RAS oncogene familyENSG0000017247635
Q12829 / RAB40B / RAB40B, member RAS oncogene familyENSG0000014154235
P0C0E4 / RAB40AL / RAB40A likeENSG0000010212835
Q96S21 / RAB40C / RAB40C, member RAS oncogene familyENSG0000019756233


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007030 Golgi organization IMP
 biological_processGO:0019068 virion assembly IMP
 biological_processGO:0035526 retrograde transport, plasma membrane to Golgi IMP
 biological_processGO:0071346 cellular response to interferon-gamma IEA
 biological_processGO:0090382 phagosome maturation IMP
 biological_processGO:1901998 toxin transport IEA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030670 phagocytic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0032588 trans-Golgi network membrane TAS
 cellular_componentGO:0045335 phagocytic vesicle IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000148429 Q92738 / USP6NL / USP6 N-terminal like  / reaction / complex






 

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