ENSG00000141542


Homo sapiens

Features
Gene ID: ENSG00000141542
  
Biological name :RAB40B
  
Synonyms : Q12829 / RAB40B / RAB40B, member RAS oncogene family
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q25.3
Gene start: 82654973
Gene end: 82698728
  
Corresponding Affymetrix probe sets: 204547_at (Human Genome U133 Plus 2.0 Array)   217597_x_at (Human Genome U133 Plus 2.0 Array)   236211_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000269347
Ensembl peptide - ENSP00000438897
Ensembl peptide - ENSP00000458638
Ensembl peptide - ENSP00000461785
NCBI entrez gene - 10966     See in Manteia.
RefSeq - XM_017024043
RefSeq - NM_006822
RefSeq - XM_005256334
RefSeq - XM_006722271
RefSeq - XM_011523528
RefSeq - XM_017024042
RefSeq Peptide - NP_006813
swissprot - I3L178
swissprot - J3KN64
swissprot - H0YFJ5
swissprot - Q12829
Ensembl - ENSG00000141542
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab40bENSDARG00000042410Danio rerio
 RAB40BENSGALG00000001545Gallus gallus
 Rab40bENSMUSG00000025170Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P0C0E4 / RAB40AL / RAB40A likeENSG0000010212889
Q8WXH6 / RAB40A / RAB40A, member RAS oncogene familyENSG0000017247688
Q96S21 / RAB40C / RAB40C, member RAS oncogene familyENSG0000019756279
RAB1A / P62820 / RAB1A, member RAS oncogene familyENSG0000013806929
RAB43 / Q86YS6 / RAB43, member RAS oncogene familyENSG0000017278027
RAB26 / Q9ULW5 / RAB26, member RAS oncogene familyENSG0000016796427
RAB1B / Q9H0U4 / RAB1B, member RAS oncogene familyENSG0000017490327
RAB35 / Q15286 / RAB35, member RAS oncogene familyENSG0000011173726
RAB19 / A4D1S5 / RAB19, member RAS oncogene familyENSG0000014695526
RAB37 / Q96AX2 / RAB37, member RAS oncogene familyENSG0000017279425
Q9H082 / RAB33B / RAB33B, member RAS oncogene familyENSG0000017200723
Q14088 / RAB33A / RAB33A, member RAS oncogene familyENSG0000013459423
RAB30 / Q15771 / RAB30, member RAS oncogene familyENSG0000013750223


Protein motifs (from Interpro)
Interpro ID Name
 IPR001496  SOCS box domain
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036036  SOCS box-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0072659 protein localization to plasma membrane IBA
 biological_processGO:1990967 multi-organism toxin transport IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005635 nuclear envelope IDA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030667 secretory granule membrane IBA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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