ENSGALG00000001545


Gallus gallus

Features
Gene ID: ENSGALG00000001545
  
Biological name :RAB40B
  
Synonyms : RAB40B
  
Possible biological names infered from orthology : P0C0E4 / Q12829 / Q8WXH6 / RAB40A / RAB40AL / RAB40A like / RAB40A, member RAS oncogene family / RAB40B, member RAS oncogene family
  
Species: Gallus gallus
  
Chr. number: 18
Strand: 1
Band:
Gene start: 3404610
Gene end: 3428181
  
Corresponding Affymetrix probe sets: Gga.12889.1.S1_at (Chicken Array)   Gga.12889.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002347
NCBI entrez gene - 417338     See in Manteia.
RefSeq - NM_001278050
RefSeq Peptide - NP_001264979
swissprot - F1NPF9
Ensembl - ENSGALG00000001545
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab40bENSDARG00000042410Danio rerio
 P0C0E4ENSG00000102128Homo sapiens
 Q12829ENSG00000141542Homo sapiens
 Q8WXH6ENSG00000172476Homo sapiens
 Rab40bENSMUSG00000025170Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAB40C / RAB40C, member RAS oncogene family / Q8VHQ4* / Q96S21*ENSGALG0000003048182
RAB1B / RAB1A, member RAS oncogene family / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A *ENSGALG0000003158230
RAB43 / RAB43, member RAS oncogene family / Q86YS6* / Q8CG50*ENSGALG0000000502127
RAB35 / RAB35, member RAS oncogene family / Q15286* / Q6PHN9*ENSGALG0000000730826
RAB19 / RAB19, member RAS oncogene family / A4D1S5* / P35294* / Ras-related protein Rab-19 *ENSGALG0000001285025
RAB33A / RAB33A, member RAS oncogene family / P97950* / Q14088*ENSGALG0000002404924
RAB30 / RAB30, member RAS oncogene family / Q15771* / Q923S9*ENSGALG0000001724824
RAB33B / Q5ZHV1 / Ras-related protein Rab-33B / Q9H082* / O35963* / RAB33B, member RAS oncogene family*ENSGALG0000000979024
RAB26 / RAB26, member RAS oncogene family / Q504M8* / Q9ULW5*ENSGALG0000003241824
RAB37 / RAB37, member RAS oncogene family / Q96AX2*ENSGALG0000002778922


Protein motifs (from Interpro)
Interpro ID Name
 IPR001496  SOCS box domain
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0072659 protein localization to plasma membrane IBA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IBA
 cellular_componentGO:0030667 secretory granule membrane IBA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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