ENSDARG00000042410


Danio rerio

Features
Gene ID: ENSDARG00000042410
  
Biological name :rab40b
  
Synonyms : rab40b / RAB40B, member RAS oncogene family
  
Possible biological names infered from orthology : P0C0E4 / Q12829 / Q8WXH6 / RAB40A / RAB40AL / RAB40A like / RAB40A, member RAS oncogene family
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 32039177
Gene end: 32066470
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000062184
Ensembl peptide - ENSDARP00000113949
NCBI entrez gene - 436797     See in Manteia.
RefSeq - NM_001002524
RefSeq Peptide - NP_001002524
swissprot - F1QKK3
swissprot - E9QHZ5
ZFIN ID - ZDB-GENE-040718-257
Ensembl - ENSDARG00000042410
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB40BENSGALG00000001545Gallus gallus
 P0C0E4ENSG00000102128Homo sapiens
 Q12829ENSG00000141542Homo sapiens
 Q8WXH6ENSG00000172476Homo sapiens
 Rab40bENSMUSG00000025170Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab40c / RAB40c, member RAS oncogene family / Q8VHQ4* / Q96S21*ENSDARG0000006120879
rab1aa / RAB1A, member RAS oncogene family aENSDARG0000005226329
rab1ab / RAB1A, member RAS oncogene family b / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A * / RAB1A, member RAS oncogene family*ENSDARG0000002966329
rab1ba / zRAB1B, member RAS oncogene family aENSDARG0000005804428
si:dkey-16l2.16ENSDARG0000003796728
rab1bb / RAB1B, member RAS oncogene family bENSDARG0000005647928
zgc:171927 / RAB1B* / Q9D1G1* / Q9H0U4* / RAB1B, member RAS oncogene family*ENSDARG0000003305628
rab35b / RAB35, member RAS oncogene family b / RAB35* / Q6PHN9* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000005842527
RAB19 (1 of many) / RAB19, member RAS oncogene family / RAB19* / A4D1S5* / P35294* / Ras-related protein Rab-19 *ENSDARG0000010115025
CABZ01072548.1 / RAB35* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000010207825
rab43 / RAB43, member RAS oncogene family / Q86YS6* / Q8CG50*ENSDARG0000005940424
rab30 / RAB30, member RAS oncogene family / Q15771* / Q923S9*ENSDARG0000003788424
zgc:101559ENSDARG0000000325723
rab33ba / RAB33B, member RAS oncogene family a / RAB33B* / O35963* / Q9H082* / RAB33B, member RAS oncogene family*ENSDARG0000005229023
rab33a / RAB33A, member RAS oncogene family / P97950* / Q14088*ENSDARG0000005739422
CABZ01072885.1 / RAB26* / Q9ULW5* / RAB26, member RAS oncogene family*ENSDARG0000010425920


Protein motifs (from Interpro)
Interpro ID Name
 IPR001496  SOCS box domain
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0072659 protein localization to plasma membrane IBA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IBA
 cellular_componentGO:0030667 secretory granule membrane IBA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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