ENSDARG00000003257


Danio rerio

Features
Gene ID: ENSDARG00000003257
  
Biological name :zgc:101559
  
Synonyms : zgc:101559
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 17429170
Gene end: 17434157
  
Corresponding Affymetrix probe sets: Dr.11130.1.A1_at (Zebrafish Array)   NM_001007417_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000005530
NCBI entrez gene - 492776     See in Manteia.
RefSeq - NM_001007417
RefSeq Peptide - NP_001007418
swissprot - A8WHV0
ZFIN ID - ZDB-GENE-041114-122
Ensembl - ENSDARG00000003257
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab33ba / RAB33B, member RAS oncogene family a / RAB33B* / O35963* / Q9H082* / RAB33B, member RAS oncogene family*ENSDARG0000005229055
rab33a / RAB33A, member RAS oncogene family / P97950* / Q14088*ENSDARG0000005739452
rab1ab / RAB1A, member RAS oncogene family b / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A * / RAB1A, member RAS oncogene family*ENSDARG0000002966336
rab35b / RAB35, member RAS oncogene family b / RAB35* / Q6PHN9* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000005842536
rab1bb / RAB1B, member RAS oncogene family bENSDARG0000005647935
rab30 / RAB30, member RAS oncogene family / Q15771* / Q923S9*ENSDARG0000003788435
rab1ba / zRAB1B, member RAS oncogene family aENSDARG0000005804435
rab1aa / RAB1A, member RAS oncogene family aENSDARG0000005226335
rab43 / RAB43, member RAS oncogene family / Q86YS6* / Q8CG50*ENSDARG0000005940434
zgc:171927 / RAB1B* / Q9D1G1* / Q9H0U4* / RAB1B, member RAS oncogene family*ENSDARG0000003305634
CABZ01072548.1 / RAB35* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000010207834
si:dkey-16l2.16ENSDARG0000003796733
RAB19 (1 of many) / RAB19, member RAS oncogene family / RAB19* / A4D1S5* / P35294* / Ras-related protein Rab-19 *ENSDARG0000010115030
rab40c / RAB40c, member RAS oncogene family / Q8VHQ4* / Q96S21*ENSDARG0000006120827
rab40b / RAB40B, member RAS oncogene family / Q12829* / RAB40A* / Q8WXH6* / P0C0E4* / RAB40AL* / RAB40A like* / RAB40A, member RAS oncogene family*ENSDARG0000004241027
CABZ01072885.1 / RAB26* / Q9ULW5* / RAB26, member RAS oncogene family*ENSDARG0000010425926


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:2000785 regulation of autophagosome assembly IBA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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