ENSDARG00000033056


Danio rerio

Features
Gene ID: ENSDARG00000033056
  
Biological name :zgc:171927
  
Synonyms : zgc:171927
  
Possible biological names infered from orthology : Q9D1G1 / Q9H0U4 / RAB1B / RAB1B, member RAS oncogene family
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 31282220
Gene end: 31287970
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000005519
NCBI entrez gene - 100124616     See in Manteia.
RefSeq - NM_001102642
RefSeq Peptide - NP_001096112
swissprot - F1RBB0
ZFIN ID - ZDB-GENE-070822-21
Ensembl - ENSDARG00000033056
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB1BENSG00000174903Homo sapiens
 Rab1bENSMUSG00000024870Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab1ab / RAB1A, member RAS oncogene family b / Rab1* / RAB1A* / P62821* / P62820* / Ras-related protein Rab-1A * / RAB1A, member RAS oncogene family*ENSDARG0000002966375
rab1ba / zRAB1B, member RAS oncogene family aENSDARG0000005804475
rab1aa / RAB1A, member RAS oncogene family aENSDARG0000005226374
rab1bb / RAB1B, member RAS oncogene family bENSDARG0000005647973
si:dkey-16l2.16ENSDARG0000003796754
CABZ01072548.1 / RAB35* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000010207852
rab35b / RAB35, member RAS oncogene family b / RAB35* / Q6PHN9* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000005842552
rab30 / RAB30, member RAS oncogene family / Q15771* / Q923S9*ENSDARG0000003788444
rab43 / RAB43, member RAS oncogene family / Q86YS6* / Q8CG50*ENSDARG0000005940443
RAB19 (1 of many) / RAB19, member RAS oncogene family / RAB19* / A4D1S5* / P35294* / Ras-related protein Rab-19 *ENSDARG0000010115041
rab33ba / RAB33B, member RAS oncogene family a / RAB33B* / O35963* / Q9H082* / RAB33B, member RAS oncogene family*ENSDARG0000005229038
zgc:101559ENSDARG0000000325738
rab40b / RAB40B, member RAS oncogene family / Q12829* / RAB40A* / Q8WXH6* / P0C0E4* / RAB40AL* / RAB40A like* / RAB40A, member RAS oncogene family*ENSDARG0000004241037
rab33a / RAB33A, member RAS oncogene family / P97950* / Q14088*ENSDARG0000005739436
rab40c / RAB40c, member RAS oncogene family / Q8VHQ4* / Q96S21*ENSDARG0000006120836
CABZ01072885.1 / RAB26* / Q9ULW5* / RAB26, member RAS oncogene family*ENSDARG0000010425931


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Golgi Cisternae Pericentriolar Stack Reorganization
COPII-mediated vesicle transport
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr