ENSDARG00000029663


Danio rerio

Features
Gene ID: ENSDARG00000029663
  
Biological name :rab1ab
  
Synonyms : rab1ab / RAB1A, member RAS oncogene family b
  
Possible biological names infered from orthology : P62820 / P62821 / Rab1 / RAB1A / RAB1A, member RAS oncogene family / Ras-related protein Rab-1A
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 24402406
Gene end: 24411961
  
Corresponding Affymetrix probe sets: Dr.4874.1.S1_at (Zebrafish Array)   NM_001007161_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000043001
NCBI entrez gene - 368883     See in Manteia.
RefSeq - NM_001007161
RefSeq Peptide - NP_001007162
swissprot - Q7ZSZ0
ZFIN ID - ZDB-GENE-030616-564
Ensembl - ENSDARG00000029663
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB1BENSGALG00000031582Gallus gallus
 RAB1AENSG00000138069Homo sapiens
 Rab1ENSMUSG00000020149Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab1aa / RAB1A, member RAS oncogene family aENSDARG0000005226395
rab1ba / zRAB1B, member RAS oncogene family aENSDARG0000005804495
rab1bb / RAB1B, member RAS oncogene family bENSDARG0000005647992
zgc:171927 / RAB1B* / Q9D1G1* / Q9H0U4* / RAB1B, member RAS oncogene family*ENSDARG0000003305679
si:dkey-16l2.16ENSDARG0000003796754
rab35b / RAB35, member RAS oncogene family b / RAB35* / Q6PHN9* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000005842554
CABZ01072548.1 / RAB35* / Q15286* / RAB35, member RAS oncogene family*ENSDARG0000010207853
rab30 / RAB30, member RAS oncogene family / Q15771* / Q923S9*ENSDARG0000003788447
rab43 / RAB43, member RAS oncogene family / Q86YS6* / Q8CG50*ENSDARG0000005940444
RAB19 (1 of many) / RAB19, member RAS oncogene family / RAB19* / A4D1S5* / P35294* / Ras-related protein Rab-19 *ENSDARG0000010115041
zgc:101559ENSDARG0000000325741
rab40b / RAB40B, member RAS oncogene family / Q12829* / RAB40A* / Q8WXH6* / P0C0E4* / RAB40AL* / RAB40A like* / RAB40A, member RAS oncogene family*ENSDARG0000004241041
rab40c / RAB40c, member RAS oncogene family / Q8VHQ4* / Q96S21*ENSDARG0000006120841
rab33ba / RAB33B, member RAS oncogene family a / RAB33B* / O35963* / Q9H082* / RAB33B, member RAS oncogene family*ENSDARG0000005229041
rab33a / RAB33A, member RAS oncogene family / P97950* / Q14088*ENSDARG0000005739440
CABZ01072885.1 / RAB26* / Q9ULW5* / RAB26, member RAS oncogene family*ENSDARG0000010425934


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 cellular_componentGO:0000139 Golgi membrane IBA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IBA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Golgi Cisternae Pericentriolar Stack Reorganization
COPII-mediated vesicle transport
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000019581 uso1 / USO1 vesicle transport factor / O60763* / Q9Z1Z0* / USO1 vesicle docking factor*  / reaction / complex
 ENSDARG00000006125 Q6P3K7 / csnk1db / casein kinase 1, delta b / Q9DC28* / CSNK1D* / P48730* / casein kinase 1 delta*  / reaction
 ENSDARG00000008370 Q7T2E3 / csnk1da / casein kinase 1, delta a / CSNK1D* / P48730* / casein kinase 1 delta*  / reaction
 ENSDARG00000104375 sec24a / SEC24 homolog A, COPII coat complex component / O95486*  / reaction / complex
 ENSDARG00000063197 golga2 / golgin A2 / A6NMD2* / A7E2F4* / A8MQT2* / A8MZA4* / D6RF30* / F8WBI6* / A6NCC3* / A6NDK9* / A6NDN3* / H3BSY2* / I6L899* / P0CG33* / P0CJ92* / Q08379* / Q08AF8* / Q8N9W4* / Q921M4* ...  / complex / reaction
 ENSDARG00000054807 sec13 / SEC13 homolog, nuclear pore and COPII coat complex component / P55735* / Q9D1M0*  / complex / reaction
 ENSDARG00000103516 sec24c / SEC24 homolog C, COPII coat complex component / P53992* / Sec24 related gene family, member C (S. cerevisiae)*  / reaction / complex
 ENSDARG00000021082 sec31a / SEC31 homolog A, COPII coat complex component / O94979* / Q3UPL0* / Protein transport protein Sec31A *  / reaction / complex
 ENSDARG00000100435 Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...  / complex / reaction
 ENSDARG00000104230 Q7SZE5 / sec23a / Sec23 homolog A, COPII coat complex component / Q15436* / Q01405* / Protein transport protein Sec23A * / Sec23 homolog A, coat complex II component*  / complex / reaction
 ENSDARG00000071906 sec24b / SEC24 homolog B, COPII coat complex component / O95487* / Sec24 related gene family, member B (S. cerevisiae)*  / reaction / complex
 ENSDARG00000056122 gdi1 / GDP dissociation inhibitor 1 / P31150* / P50396* / Rab GDP dissociation inhibitor alpha *  / complex
 ENSDARG00000058471 plk1 / polo-like kinase 1 (Drosophila) / P53350* / Q07832* / polo like kinase 1*  / complex






 

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