ENSMUSG00000039224


Mus musculus

Features
Gene ID: ENSMUSG00000039224
  
Biological name :D1Pas1
  
Synonyms : D1Pas1 / P16381 / Putative ATP-dependent RNA helicase Pl10
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: H5
Gene start: 186967416
Gene end: 186970627
  
Corresponding Affymetrix probe sets: 10352558 (MoGene1.0st)   1422956_at (Mouse Genome 430 2.0 Array)   1437693_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000035261
NCBI entrez gene - 110957     See in Manteia.
MGI - MGI:91842
RefSeq - NM_033077
RefSeq Peptide - NP_149068
swissprot - B9EIA2
swissprot - P16381
Ensembl - ENSMUSG00000039224
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx3aENSDARG00000020573Danio rerio
 ddx3bENSDARG00000005774Danio rerio
 DDX3XENSGALG00000016231Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ddx3x / Q62167 / ATP-dependent RNA helicase DDX3X / O00571* / DEAD-box helicase 3, X-linked*ENSMUSG0000000078795
Ddx3y / Q62095 / ATP-dependent RNA helicase DDX3Y / O15523* / DEAD-box helicase 3, Y-linked*ENSMUSG0000006904588
Ddx4 / Q61496 / ATP-dependent RNA helicase DDX4 / Q9NQI0* / DEAD-box helicase 4*ENSMUSG0000002175840
Ddx41 / Q91VN6 / Probable ATP-dependent RNA helicase DDX41 / Q9UJV9* / DEAD-box helicase 41*ENSMUSG0000002149430
Ddx59 / Q9DBN9 / Probable ATP-dependent RNA helicase DDX59 / Q5T1V6* / DEAD-box helicase 59*ENSMUSG0000002640425
Ddx1 / Q91VR5 / ATP-dependent RNA helicase DDX1 / Q92499* / DEAD-box helicase 1*ENSMUSG0000003714921


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006413 translational initiation IBA
 biological_processGO:0007059 chromosome segregation IBA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0030154 cell differentiation IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001147 small testis "reduced size of the male reproductive glands" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:58959]
Show

Allelic Composition: Cyp27b1tm1b(EUCOMM)Hmgu/Cyp27b1tm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Cyp27b1tm1b(EUCOMM)Hmgu/Tcp

 MP:0001925 male infertility "inability of male to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409]
Show

Allelic Composition: Cyp27b1tm1b(EUCOMM)Hmgu/Cyp27b1tm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Cyp27b1tm1b(EUCOMM)Hmgu/Tcp

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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