ENSMUSG00000040383


Mus musculus

Features
Gene ID: ENSMUSG00000040383
  
Biological name :Aqr
  
Synonyms : Aqr / Intron-binding protein aquarius / Q8CFQ3
  
Possible biological names infered from orthology : aquarius intron-binding spliceosomal factor / O60306
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: E4
Gene start: 114101170
Gene end: 114187024
  
Corresponding Affymetrix probe sets: 10485989 (MoGene1.0st)   1430275_a_at (Mouse Genome 430 2.0 Array)   1430971_a_at (Mouse Genome 430 2.0 Array)   1430972_x_at (Mouse Genome 430 2.0 Array)   1433497_at (Mouse Genome 430 2.0 Array)   1452448_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000047157
Ensembl peptide - ENSMUSP00000099602
NCBI entrez gene - 11834     See in Manteia.
MGI - MGI:1276102
RefSeq - NM_001290788
RefSeq - NM_009702
RefSeq Peptide - NP_001277717
RefSeq Peptide - NP_033832
swissprot - Q8CFQ3
swissprot - A2AQA7
Ensembl - ENSMUSG00000040383
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 aqrENSDARG00000016775Danio rerio
 AQRENSGALG00000009838Gallus gallus
 AQRENSG00000021776Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Znfx1 / Q8R151 / zinc finger, NFX1-type containing 1 / Q9P2E3*ENSMUSG0000003950118
Setx / A2AKX3 / Probable helicase senataxin / Q7Z333* / senataxin*ENSMUSG0000004353514


Protein motifs (from Interpro)
Interpro ID Name
 IPR026300  CWF11 family
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032174  Intron-binding protein aquarius, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Hprtb-m3/Y,Impdh2tm1Bmi/Impdh2+
Genetic Background: involves: 129P2/OlaHsd

Allelic Composition: AqrGt(PT1-ATG)193Wrst/AqrGt(PT1-ATG)193Wrst
Genetic Background: involves: 129S1/Sv * 129X1/SvJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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